Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 0.0e+00 1489.2 898 100.0
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 7.2e-303 1043.9 901 76.6
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 6.5e-288 994.2 853 69.5
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 1.1e-271 940.3 820 74.0
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 3.4e-260 902.1 853 70.9
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 1.3e-240 837.0 853 68.2
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 4.2e-170 602.8 855 52.4
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.7e-158 563.1 854 47.3
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 4.9e-158 562.8 854 44.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 4.9e-158 562.8 859 50.1
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 6.3e-158 562.4 866 50.8
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 1.1e-157 561.6 893 45.2
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.3e-155 554.7 855 49.9
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 1.4e-149 534.6 854 46.4
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 9.2e-149 531.9 854 48.4
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 1.2e-148 531.6 854 48.8
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.3e-147 528.1 854 44.6
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 5.0e-147 526.2 855 41.4
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.1e-145 520.8 860 49.1
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 4.7e-145 519.6 854 45.7
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 6.2e-145 519.2 856 41.4
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 1.4e-144 518.1 856 48.0
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.8e-144 517.7 855 48.0
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.8e-144 517.7 855 48.0
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 4.1e-141 506.5 854 45.8
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 5.0e-139 499.6 854 45.4
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.3e-138 496.5 854 44.1
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.2e-135 488.4 854 45.0
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 1.2e-135 488.4 855 40.7
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 2.6e-135 487.3 854 43.1
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.1e-133 481.9 853 42.1
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 2.1e-132 477.6 855 46.7
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 1.0e-131 475.3 854 45.3
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.9e-131 473.4 854 41.8
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 1.6e-129 468.0 878 45.6
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 1.8e-128 464.5 797 48.3
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 8.9e-128 462.2 838 39.9
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 8.9e-128 462.2 844 38.5
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.2e-127 461.8 980 43.3
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 2.6e-127 460.7 854 45.6
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 3.8e-126 456.8 855 44.2
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.7e-124 450.7 767 45.0
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-123 448.7 855 45.3
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-123 448.0 863 43.0
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.3e-123 447.6 854 41.2
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.0e-123 447.2 854 44.5
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 3.9e-123 446.8 861 40.7
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 5.1e-123 446.4 854 44.6
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 5.1e-123 446.4 855 42.0
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 8.7e-123 445.7 854 41.0
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.9e-122 444.5 856 41.5
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.3e-122 443.7 854 41.3
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.4e-120 438.3 855 41.6
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.8e-120 438.0 928 43.1
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 2.0e-119 434.5 857 43.5
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 5.8e-119 433.0 855 42.3
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 4.2e-117 426.8 863 43.6
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 7.1e-117 426.0 863 42.9
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-115 421.4 853 43.4
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 5.1e-115 419.9 815 42.2
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.1e-114 418.7 854 43.7
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 7.3e-114 416.0 894 41.4
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 8.1e-113 412.5 851 36.8
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 3.8e-110 403.7 705 40.7
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 4.9e-110 403.3 859 41.2
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 1.9e-109 401.4 900 40.4
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 3.2e-109 400.6 479 67.8
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 4.2e-109 400.2 857 41.2
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 4.2e-109 400.2 692 39.6
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.5e-108 397.1 856 41.5
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.8e-107 394.8 856 41.5
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.3e-107 394.4 855 41.8
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 3.9e-107 393.7 809 37.8
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-106 392.1 854 41.8
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 1.1e-106 392.1 855 36.7
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 3.3e-106 390.6 728 43.8
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 3.3e-106 390.6 857 39.2
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 5.6e-106 389.8 830 35.4
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 9.6e-106 389.0 854 42.5
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.4e-104 385.2 823 41.9
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.8e-104 384.8 778 37.5
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 4.0e-104 383.6 855 36.6
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 1.7e-102 378.3 840 40.5
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 2.9e-102 377.5 855 39.1
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.0e-100 369.8 721 44.9
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 3.0e-99 367.5 854 40.0
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 3.0e-99 367.5 858 39.4
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.4e-96 357.8 623 40.9
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 6.9e-96 356.3 617 40.2
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 1.2e-92 345.5 831 41.0
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 4.3e-90 337.0 840 40.0
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 6.3e-89 333.2 858 39.7
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.1e-88 332.4 855 33.5
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 9.0e-88 329.3 641 46.5
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.6e-87 327.8 857 33.6
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 2.6e-87 327.8 856 34.1
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 1.3e-86 325.5 584 39.2
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 1.1e-85 322.4 438 46.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 1.1e-85 322.4 757 34.7
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 3.3e-82 310.8 857 33.1
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 4.3e-82 310.5 857 34.5
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.3e-81 308.9 547 38.0
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 1.7e-81 308.5 619 36.2
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.7e-81 307.4 631 36.6
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 5.3e-80 303.5 876 32.5
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 6.9e-80 303.1 784 33.5
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 9.1e-80 302.8 854 36.5
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.6e-79 301.2 859 32.5
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 5.9e-79 300.1 876 32.3
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 5.9e-79 300.1 876 32.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.0e-78 299.3 876 32.4
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 1.9e-77 295.0 856 37.1
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 1.9e-77 295.0 729 40.3
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.5e-77 294.7 876 32.4
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 3.2e-77 294.3 856 37.4
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 3.2e-77 294.3 856 37.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 7.2e-77 293.1 880 32.3
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 4.7e-76 290.4 616 44.2
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 4.7e-76 290.4 818 35.2
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 6.3e-73 280.0 875 31.8
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 5.3e-72 276.9 927 29.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.0e-71 275.0 563 36.2
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 5.0e-70 270.4 437 42.8
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 1.6e-68 265.4 818 31.8
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.4e-64 252.3 909 28.6
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 7.7e-63 246.5 248 57.7
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 5.5e-61 240.4 654 38.7
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 6.3e-57 226.9 792 30.2
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.5e-53 215.7 442 32.6
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 5.5e-53 213.8 248 53.6
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 1.2e-52 212.6 331 41.1
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 1.2e-52 212.6 331 41.1
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 7.2e-45 186.8 416 49.8
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.8e-44 184.9 171 59.6
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 6.3e-41 173.7 149 68.5
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 9.5e-37 159.8 626 28.3
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 4.7e-36 157.5 171 53.2
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.3e-33 149.4 272 38.6
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 1.7e-33 149.1 170 52.9
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 1.7e-33 149.1 170 52.9
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-33 148.7 184 50.0
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.1e-32 146.4 485 27.8
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 3.0e-30 138.3 96 77.1
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 6.6e-30 137.1 207 44.4
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 3.6e-28 131.3 355 31.5
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 3.6e-28 131.3 105 62.9
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 2.3e-27 128.6 220 41.8
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 2.3e-27 128.6 220 41.8
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 3.1e-27 128.3 174 45.4
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 4.9e-25 120.9 293 33.8
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.1e-24 119.8 435 25.5
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 4.1e-24 117.9 419 29.8
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 1.6e-23 115.9 105 61.9
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 5.6e-21 107.5 447 26.6
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 8.3e-17 93.6 145 37.9
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 3.2e-16 91.7 129 45.0
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.3e-13 80.5 295 28.5
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 7.3e-13 80.5 111 45.9
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 1.2e-12 79.7 94 54.3
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 1.2e-12 79.7 94 48.9
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 2.1e-12 79.0 146 39.0
FvH4_5g37879 Fragaria vesca HOM05D003496 ORTHO05D003909 2.1e-12 79.0 84 50.0
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 2.8e-12 78.6 99 47.5
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 3.6e-12 78.2 100 52.0
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 4.7e-12 77.8 82 50.0
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.8e-11 75.9 567 32.3
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 1.5e-10 72.8 107 39.3
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 9.9e-10 70.1 81 49.4
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.2e-09 68.9 92 40.2
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 4.2e-08 64.7 127 36.2
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 1.6e-07 62.8 68 52.9
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.1e-07 62.4 278 26.3
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 3.5e-07 61.6 118 38.1
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 3.9e-06 58.2 140 39.3
SEGI_01702 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 3.9e-06 58.2 107 34.6
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 5.1e-06 57.8 137 34.3
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 6.6e-06 57.4 348 25.6


User provided reference genes

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