Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 0.0e+00 1401.7 760 100.0
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 0.0e+00 1279.6 758 92.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 0.0e+00 1172.1 830 78.6
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 0.0e+00 1168.3 830 77.0
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 0.0e+00 1093.2 828 74.8
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.9e-281 971.8 829 65.9
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.7e-279 964.5 829 64.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.5e-274 948.0 823 66.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.6e-273 944.1 830 64.7
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.3e-272 941.8 833 65.4
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.6e-269 932.2 816 64.7
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 9.2e-267 923.7 847 63.5
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.4e-261 905.2 827 61.9
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.1e-259 900.2 834 62.1
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 9.2e-259 897.1 827 60.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 3.3e-256 888.6 860 59.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.3e-256 888.3 832 60.7
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 4.3e-256 888.3 833 60.6
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 9.5e-256 887.1 837 59.5
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.1e-255 885.9 831 60.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.8e-255 885.6 832 61.2
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.2e-255 884.4 831 59.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 8.1e-255 884.0 836 60.8
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.3e-252 876.7 829 60.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 8.3e-252 874.0 832 58.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.4e-251 872.5 830 59.4
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.1e-251 871.7 836 60.2
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 7.1e-251 870.9 834 60.2
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.5e-250 868.6 835 58.9
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.0e-249 865.5 877 57.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.5e-248 863.2 829 58.3
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.5e-248 862.4 828 58.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-247 860.1 836 58.5
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-247 860.1 837 57.7
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.8e-247 859.0 831 60.4
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 4.7e-247 858.2 836 58.0
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 6.2e-247 857.8 834 58.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.2e-247 857.8 829 57.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.3e-246 855.9 835 57.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 4.0e-246 855.1 837 58.3
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.2e-246 854.7 831 58.5
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 8.9e-246 854.0 837 57.0
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.2e-245 853.6 830 57.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.5e-245 853.2 835 58.9
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.5e-245 853.2 839 59.7
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.4e-245 852.0 831 57.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 6.4e-244 847.8 835 57.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.4e-244 847.4 831 57.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.2e-243 845.5 831 56.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.2e-243 845.5 835 57.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 7.1e-243 844.3 837 57.1
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 9.2e-243 844.0 838 58.1
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.0e-241 840.5 829 58.0
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.7e-241 839.7 830 56.6
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 5.1e-241 838.2 836 57.3
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.5e-240 836.6 828 57.7
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.6e-239 832.0 818 57.0
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 2.4e-238 829.3 829 58.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.1e-238 828.9 826 57.4
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 4.0e-238 828.6 842 55.7
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.5e-237 826.6 828 57.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.2e-236 822.8 830 58.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 5.4e-235 818.1 763 60.3
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.1e-232 810.4 828 55.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.5e-232 809.3 832 55.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.8e-230 803.1 807 60.1
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 4.0e-230 802.0 840 56.4
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.9e-230 801.2 836 55.9
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 7.6e-229 797.7 835 56.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 2.2e-228 796.2 836 57.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-228 795.8 836 55.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.4e-227 793.5 871 54.5
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.4e-227 793.5 825 56.4
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.3e-223 780.4 778 57.1
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 8.1e-223 777.7 831 56.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.4e-220 768.1 816 54.0
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.8e-212 742.3 835 53.4
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 5.1e-209 731.9 834 50.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.1e-207 726.5 838 50.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.6e-205 719.5 813 52.2
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.6e-205 719.5 813 52.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 7.6e-205 718.0 813 52.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.0e-204 717.6 828 49.8
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 6.5e-204 714.9 815 50.9
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.4e-203 713.8 833 49.7
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.9e-203 713.4 856 49.2
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.5e-203 713.0 854 49.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.7e-202 709.5 829 50.4
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.7e-202 709.5 809 52.3
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-201 707.2 810 52.3
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.3e-201 707.2 810 52.3
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 9.7e-200 701.0 831 51.3
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 4.8e-199 698.7 838 49.0
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.1e-194 681.8 820 50.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.8e-183 645.6 841 46.8
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.0e-180 635.6 681 53.3
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 8.8e-177 624.8 805 47.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.6e-176 623.2 684 53.4
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 7.7e-173 611.7 840 44.5
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 8.5e-164 581.6 600 56.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 2.7e-162 576.6 616 52.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.7e-162 575.9 447 71.1
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.8e-153 547.4 558 54.7
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.2e-153 545.8 601 55.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.6e-144 516.9 856 39.8
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.4e-144 516.5 492 61.6
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 5.1e-132 476.1 325 81.8
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.2e-130 471.5 448 62.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.0e-124 450.3 386 63.5
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.6e-123 446.0 824 39.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.9e-119 433.0 877 36.0
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.6e-115 418.7 315 69.8
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.4e-113 414.1 822 36.1
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 5.3e-97 359.8 378 54.8
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-95 355.1 200 92.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 6.3e-90 336.3 931 29.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.2e-87 327.8 287 65.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.8e-87 327.0 444 45.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 7.9e-85 319.3 284 66.5
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.1e-77 294.7 238 66.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.7e-77 294.3 392 47.4
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 7.9e-77 292.7 235 66.4
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 4.5e-64 250.4 270 57.0
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.7e-63 248.4 195 66.7
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.9e-63 247.7 214 62.1
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 5.2e-60 236.9 158 79.1
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-57 228.8 274 51.5
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 8.0e-53 213.0 800 27.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-52 212.6 176 63.1
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-48 198.0 182 59.3
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 6.8e-44 183.3 205 52.7
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.5e-43 179.9 143 67.1
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 3.6e-37 161.0 170 54.1
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 2.6e-35 154.8 96 84.4
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.7e-34 152.1 84 82.1
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.9e-34 151.4 106 73.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 5.2e-28 130.6 281 37.7
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 6.4e-26 123.6 279 36.9
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 5.4e-25 120.6 286 36.0
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 5.4e-25 120.6 78 69.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 4.3e-22 110.9 115 53.0
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.2e-21 109.4 512 23.6
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.1e-20 104.8 76 69.7
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 2.7e-16 91.7 298 26.8
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 6.6e-15 87.0 668 22.3
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.9e-14 85.5 133 40.6
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 9.5e-14 83.2 201 42.3
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.6e-13 82.4 176 40.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.8e-13 81.6 204 41.7
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.4e-11 74.7 55 61.8
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.8e-11 73.9 100 51.0
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.8e-11 73.9 148 35.8
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 9.9e-11 73.2 65 56.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.9e-11 73.2 50 70.0
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.7e-10 72.4 73 50.7
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.9e-06 58.9 49 57.1
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.5e-06 58.5 75 42.7
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.6e-06 56.6 148 27.0


User provided reference genes

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