Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 7.5e-169 597.0 289 100.0
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.1e-127 460.3 335 70.1
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 3.2e-127 458.8 335 69.6
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.0e-125 453.8 335 69.0
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.9e-125 451.8 329 71.7
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.6e-102 376.7 337 61.1
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 8.2e-99 364.4 282 66.3
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.6e-86 323.6 338 50.0
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 4.6e-86 322.0 341 50.1
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 6.7e-85 318.2 337 49.6
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 2.4e-82 309.7 343 46.9
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 2.4e-82 309.7 340 46.8
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 4.1e-82 308.9 341 45.7
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 5.3e-82 308.5 312 50.3
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 6.9e-82 308.1 335 46.9
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 5.9e-81 305.1 295 51.9
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.0e-80 304.3 313 52.1
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.9e-80 302.8 315 49.5
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 5.0e-80 302.0 319 48.9
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 3.2e-79 299.3 341 45.2
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 4.2e-79 298.9 344 47.1
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 5.5e-79 298.5 312 50.0
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 1.2e-78 297.4 331 45.0
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 6.1e-78 295.0 339 47.2
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 7.9e-78 294.7 336 44.9
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 1.0e-77 294.3 356 43.8
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 8.8e-77 291.2 314 48.1
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.1e-76 290.8 322 48.1
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.5e-76 290.4 343 44.9
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 2.6e-76 289.7 283 53.0
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 4.4e-76 288.9 287 48.1
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 5.7e-76 288.5 287 48.4
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.7e-75 287.0 335 45.1
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.8e-75 286.2 340 44.1
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 6.3e-75 285.0 295 47.5
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 6.3e-75 285.0 314 49.0
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.5e-73 280.4 339 44.8
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 2.0e-73 280.0 287 47.4
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 2.6e-73 279.6 296 48.3
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 3.5e-73 279.3 341 44.6
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.0e-72 277.7 320 45.6
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 5.0e-72 275.4 302 45.7
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 8.5e-72 274.6 305 46.6
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 8.5e-72 274.6 300 47.3
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.9e-71 273.5 342 42.1
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 4.2e-71 272.3 308 45.5
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 4.2e-71 272.3 350 43.4
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 7.2e-71 271.6 283 48.8
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.2e-70 270.8 336 42.0
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.6e-70 270.4 292 47.3
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 2.7e-70 269.6 284 46.5
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 6.1e-70 268.5 286 48.3
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 8.0e-70 268.1 353 40.8
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.0e-69 267.7 336 42.9
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 1.8e-69 266.9 299 44.1
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.3e-69 266.5 342 43.3
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 2.3e-69 266.5 311 45.3
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 3.0e-69 266.2 319 44.2
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 3.0e-69 266.2 309 43.4
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 3.0e-69 266.2 303 46.2
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 5.2e-69 265.4 312 43.3
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 8.8e-69 264.6 286 47.2
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 9.7e-68 261.2 297 44.8
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.3e-67 260.8 293 45.7
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 1.7e-67 260.4 293 45.7
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 8.2e-67 258.1 337 43.3
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 1.4e-66 257.3 293 44.7
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.4e-66 257.3 297 43.8
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.4e-66 257.3 259 49.8
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.4e-66 257.3 295 46.4
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 1.8e-66 256.9 341 42.2
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.4e-66 256.5 299 47.8
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 2.4e-66 256.5 294 45.2
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 4.1e-66 255.8 347 38.6
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 4.1e-66 255.8 295 46.1
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 1.2e-65 254.2 290 49.0
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 2.0e-65 253.4 293 44.4
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 2.6e-65 253.1 333 41.7
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 3.5e-65 252.7 298 43.6
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.3e-64 250.8 288 46.2
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 2.9e-64 249.6 282 44.7
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 3.2e-63 246.1 264 44.7
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 3.6e-62 242.7 288 45.5
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 3.6e-62 242.7 293 42.3
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 8.0e-62 241.5 228 53.1
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.8e-61 240.4 262 46.6
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 2.8e-59 233.0 259 45.2
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-58 231.1 286 42.3
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 9.4e-55 218.0 283 42.8
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 1.2e-52 211.1 228 50.9
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.6e-52 209.9 232 47.0
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 9.8e-52 208.0 226 44.7
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.3e-51 207.6 226 44.2
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 2.2e-51 206.8 418 31.8
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 2.4e-50 203.4 294 39.1
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 4.1e-50 202.6 149 63.8
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 1.8e-42 177.2 290 37.9
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 7.8e-41 171.8 294 38.8
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 6.6e-40 168.7 257 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.9e-39 167.2 290 38.6
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 4.4e-36 156.0 293 34.5
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.7e-35 154.1 176 47.7
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 3.2e-34 149.8 291 35.1
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.8e-30 136.7 338 30.5
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.8e-29 134.0 185 39.5
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.9e-27 126.7 380 28.7
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-23 114.8 123 48.8
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 1.1e-21 108.2 106 49.1
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.5e-20 104.4 170 38.2
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 5.4e-18 95.9 133 39.8
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.2e-17 94.7 151 38.4
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 4.6e-17 92.8 321 28.7
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 7.8e-17 92.0 105 47.6
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 2.6e-12 77.0 77 42.9
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 8.7e-08 62.0 51 58.8


User provided reference genes

Program Settings