Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 3.2e-50 201.4 102 100.0
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.2e-32 141.0 95 78.9
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.8e-32 140.6 95 78.9
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.8e-32 140.2 94 78.7
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 7.5e-31 137.1 95 76.8
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 3.5e-28 128.3 95 74.7
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 3.5e-28 128.3 95 74.7
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 3.0e-24 115.2 65 86.2
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 8.6e-19 97.1 100 58.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 7.3e-18 94.0 98 61.2
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 7.5e-15 84.0 99 52.5
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 8.3e-14 80.5 100 47.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 1.2e-12 76.6 97 53.6
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 3.5e-12 75.1 104 50.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 3.5e-12 75.1 98 50.0
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 6.0e-12 74.3 103 49.5
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 6.0e-12 74.3 104 47.1
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 6.0e-12 74.3 98 51.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 2.3e-11 72.4 103 47.6
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 6.6e-11 70.9 100 47.0
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.9e-10 69.3 100 48.0
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.9e-10 69.3 74 55.4
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.9e-10 69.3 75 56.0
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 3.3e-10 68.6 65 61.5
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 5.6e-10 67.8 102 51.0
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 7.3e-10 67.4 102 46.1
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 7.3e-10 67.4 71 53.5
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.1e-09 65.9 94 44.7
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.1e-09 65.9 100 50.0
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.0e-09 63.9 103 45.6
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.1e-08 63.5 107 43.9
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.1e-08 63.5 99 45.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.1e-08 62.0 94 44.7
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 3.1e-08 62.0 74 50.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 4.0e-08 61.6 100 44.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 4.0e-08 61.6 100 44.0
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 5.2e-08 61.2 74 55.4
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 6.8e-08 60.8 78 48.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 8.9e-08 60.5 104 47.1
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.5e-07 59.7 99 45.5
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.5e-07 59.7 81 46.9
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 3.4e-07 58.5 69 59.4
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 3.4e-07 58.5 77 48.1
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 4.4e-07 58.2 104 45.2
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 7.5e-07 57.4 72 48.6
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.9e-06 55.5 103 41.7
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 2.9e-06 55.5 70 55.7
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 3.7e-06 55.1 80 45.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 4.9e-06 54.7 101 43.6
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 8.3e-06 53.9 72 47.2


User provided reference genes

Program Settings