Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 6.4e-160 567.4 290 100.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 4.9e-152 541.2 302 93.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.1e-148 530.0 302 91.1
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 2.5e-148 528.9 302 91.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 7.3e-148 527.3 302 90.1
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.9e-144 515.4 302 89.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 6.6e-133 477.6 301 81.1
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 2.1e-131 472.6 301 79.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.0e-130 468.4 300 78.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 2.6e-129 465.7 302 79.5
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 5.8e-129 464.5 300 78.7
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 5.8e-129 464.5 302 78.1
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 9.9e-129 463.8 300 78.3
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.3e-128 463.4 302 77.8
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.7e-128 463.0 300 77.7
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.7e-128 463.0 302 79.1
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 4.9e-128 461.5 300 79.0
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 8.4e-128 460.7 302 77.2
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.1e-127 460.3 301 77.1
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.4e-127 459.9 301 76.1
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.9e-127 459.5 301 76.7
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.2e-127 458.8 302 76.8
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.2e-127 458.4 301 76.7
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 5.4e-127 458.0 300 77.7
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 9.3e-127 457.2 300 78.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.2e-126 456.8 301 76.4
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.6e-126 456.4 300 76.3
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.6e-126 456.4 300 77.3
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.1e-126 456.1 301 76.4
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.1e-126 456.1 301 77.7
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.7e-126 455.7 300 76.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.5e-126 455.3 300 78.3
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 3.5e-126 455.3 302 76.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 3.5e-126 455.3 318 74.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 6.0e-126 454.5 300 76.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 6.0e-126 454.5 300 76.7
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 7.9e-126 454.1 299 76.6
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 7.9e-126 454.1 301 78.1
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.0e-125 453.8 300 76.0
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.0e-125 453.8 301 75.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.3e-125 453.4 301 75.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.7e-125 453.0 301 75.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.7e-125 453.0 300 76.0
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.3e-125 452.6 301 75.7
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.0e-125 452.2 301 76.1
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 3.0e-125 452.2 300 76.3
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 3.9e-125 451.8 301 75.7
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.9e-125 451.8 298 76.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.9e-125 451.8 301 76.7
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 3.9e-125 451.8 299 75.6
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 5.1e-125 451.4 300 75.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 8.7e-125 450.7 302 74.8
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 8.7e-125 450.7 301 75.7
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.9e-124 449.5 301 75.1
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.5e-124 449.1 302 74.5
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.5e-124 449.1 300 75.3
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 3.3e-124 448.7 262 89.7
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 4.3e-124 448.4 300 75.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 5.6e-124 448.0 300 75.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 7.4e-124 447.6 300 75.0
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 7.4e-124 447.6 300 75.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.4e-124 447.6 300 75.7
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 9.6e-124 447.2 301 75.1
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 9.6e-124 447.2 301 76.1
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.3e-123 446.8 300 74.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.6e-123 446.4 300 75.7
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.8e-123 444.9 302 74.5
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.2e-123 444.5 300 74.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.1e-122 443.7 302 75.5
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.8e-122 443.0 300 74.3
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.8e-122 443.0 301 74.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.0e-122 441.8 301 73.4
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 4.0e-122 441.8 303 74.9
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.0e-122 441.8 301 75.7
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 4.0e-122 441.8 300 74.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.3e-122 441.4 302 73.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.3e-122 441.4 303 74.6
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 5.3e-122 441.4 300 74.3
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.3e-122 441.4 303 74.3
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 6.9e-122 441.0 303 74.6
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 6.9e-122 441.0 301 74.1
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 9.0e-122 440.7 302 73.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 9.0e-122 440.7 302 74.2
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 9.0e-122 440.7 302 74.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-121 440.3 302 74.2
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 2.0e-121 439.5 300 74.7
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.0e-121 439.5 302 74.2
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 2.6e-121 439.1 303 74.6
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.7e-120 436.4 304 74.3
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 2.9e-120 435.6 300 73.7
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.1e-119 433.7 335 68.4
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.4e-119 433.3 302 73.2
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.4e-119 433.3 301 72.8
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.9e-119 433.0 302 72.2
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 3.2e-119 432.2 301 73.4
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.5e-119 431.4 299 73.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.2e-118 430.3 301 72.4
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 2.1e-118 429.5 317 69.1
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.7e-118 429.1 301 72.4
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 3.5e-118 428.7 340 66.2
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 6.0e-118 427.9 302 72.5
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.0e-117 427.2 301 72.4
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 1.8e-117 426.4 299 72.2
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.1e-117 424.9 321 69.8
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.7e-117 424.1 304 71.1
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 4.3e-116 421.8 301 71.8
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 9.6e-116 420.6 304 70.1
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.3e-115 420.2 304 70.1
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.1e-115 419.5 300 69.3
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 6.2e-115 417.9 302 69.2
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.4e-114 416.8 300 70.7
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.1e-114 415.6 306 69.6
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 5.3e-114 414.8 299 70.2
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.9e-112 409.1 299 69.9
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.1e-107 392.9 256 77.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.4e-106 390.2 289 67.1
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 4.5e-105 385.2 309 67.6
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 2.2e-104 382.9 299 62.5
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 2.2e-104 382.9 289 67.1
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.4e-103 380.2 250 75.6
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 1.4e-103 380.2 340 60.3
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.2e-102 377.1 287 66.6
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 6.1e-102 374.8 300 66.7
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 9.0e-98 360.9 301 63.1
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 4.6e-94 348.6 300 62.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.6e-92 342.8 299 58.5
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.2e-89 334.0 508 42.1
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 9.4e-87 324.3 199 79.4
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.9e-85 318.9 302 59.9
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.0e-84 316.6 209 74.6
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 4.4e-84 315.5 297 55.9
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 5.7e-84 315.1 209 74.6
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 1.1e-82 310.8 290 54.1
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.1e-82 308.9 202 75.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.8e-74 283.5 242 63.6
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 6.5e-72 275.0 243 61.7
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.6e-68 263.1 303 47.5
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.7e-65 253.1 246 52.4
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.6e-54 216.1 154 73.4
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.0e-45 188.0 285 38.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.7e-43 180.6 148 57.4
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 2.2e-43 180.3 207 48.3
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 2.7e-41 173.3 298 36.9
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.8e-37 160.6 196 48.0
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 9.8e-36 154.8 84 86.9
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.0e-32 144.8 84 81.0
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.5e-31 141.0 84 78.6
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.8e-21 107.5 81 67.9
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 4.0e-21 106.3 70 75.7
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 9.9e-20 101.7 85 61.2
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-19 101.3 63 76.2
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 2.7e-17 93.6 234 26.9
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.0e-16 91.7 86 55.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.7e-16 90.9 141 39.7
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 2.3e-16 90.5 110 48.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 9.6e-15 85.1 147 38.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 3.0e-08 63.5 53 64.2
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 2.1e-06 57.4 63 54.0


User provided reference genes

Program Settings