Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.1e-185 652.1 461 100.0
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 5.2e-156 555.1 461 89.6
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.7e-119 433.7 461 68.5
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 9.6e-118 427.9 467 67.2
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 8.1e-109 398.3 483 61.9
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 2.1e-101 373.6 478 68.8
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 8.5e-90 335.1 242 78.1
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.7e-35 154.1 260 46.2
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.3e-34 151.8 282 43.3
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.7e-29 134.8 295 41.0
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 6.4e-29 132.9 259 37.8
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 5.4e-28 129.8 211 43.6
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 2.0e-27 127.9 265 40.0
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.7e-27 127.5 295 39.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.0e-27 126.3 219 44.3
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 6.0e-27 126.3 219 44.3
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 6.0e-27 126.3 208 42.8
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 6.0e-27 126.3 224 41.5
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.8e-27 125.9 315 39.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.8e-27 125.9 315 39.0
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 2.3e-26 124.4 240 40.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 8.6e-26 122.5 217 42.9
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.5e-25 121.7 202 43.1
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.5e-25 121.7 227 39.2
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.5e-25 121.7 269 38.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.9e-25 121.3 326 35.3
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.9e-25 121.3 224 41.5
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 5.6e-25 119.8 212 42.5
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 5.6e-25 119.8 289 34.9
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.6e-24 118.2 204 45.1
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.8e-24 117.5 201 42.8
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 6.2e-24 116.3 190 43.7
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 8.1e-24 115.9 258 37.2
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 8.1e-24 115.9 300 38.0
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-23 114.8 322 33.9
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.8e-23 114.8 194 40.2
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.3e-23 114.4 251 38.6
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.3e-23 114.4 240 37.5
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 5.2e-23 113.2 318 35.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.8e-23 112.8 210 41.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.9e-23 112.5 228 37.3
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 8.9e-23 112.5 291 37.5
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 8.9e-23 112.5 217 41.9
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.2e-22 112.1 260 36.2
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.5e-22 111.7 235 37.4
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.6e-22 110.9 244 37.3
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 4.4e-22 110.2 228 39.9
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.2e-21 107.8 311 32.5
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-21 107.8 311 32.5
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-21 107.8 311 32.5
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 2.9e-21 107.5 313 34.2
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 6.4e-21 106.3 208 40.4
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.4e-21 106.3 217 36.9
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.3e-21 105.9 323 32.5
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 8.3e-21 105.9 218 37.2
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.9e-20 104.8 279 37.3
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 7.1e-20 102.8 191 40.8
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 9.2e-20 102.4 207 39.6
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.2e-20 102.4 375 31.7
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-19 102.1 266 33.1
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.2e-19 102.1 205 40.0
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.6e-19 101.7 297 36.7
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 2.1e-19 101.3 264 37.1
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.7e-19 100.9 242 36.0
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.7e-19 100.9 210 41.9
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 3.5e-19 100.5 262 34.4
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 4.6e-19 100.1 145 44.1
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.0e-18 99.0 270 34.4
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.0e-18 99.0 260 33.1
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.3e-18 98.6 286 33.9
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.3e-18 97.8 317 31.9
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 3.0e-18 97.4 285 31.6
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.9e-18 97.1 280 31.4
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.9e-18 97.1 132 48.5
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 3.9e-18 97.1 207 38.6
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.1e-18 96.7 279 33.7
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.1e-18 96.7 375 31.2
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.5e-17 95.1 275 33.8
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 1.9e-17 94.7 194 41.8
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.9e-17 94.7 246 35.0
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 4.3e-17 93.6 257 33.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.5e-17 92.4 281 31.7
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.5e-17 92.4 241 34.0
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.1e-16 91.3 249 36.1
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 4.7e-16 90.1 257 32.3
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 6.2e-16 89.7 130 46.9
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-15 89.0 242 32.6
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.1e-15 89.0 321 32.4
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.8e-15 88.2 288 33.0
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 4.0e-15 87.0 125 44.8
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 8.9e-15 85.9 281 33.5
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.5e-14 85.1 232 36.6
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 2.0e-14 84.7 235 32.3
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.0e-14 84.7 267 34.1
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.0e-14 84.7 234 33.3
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 2.6e-14 84.3 237 32.5
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 3.4e-14 84.0 140 40.7
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 5.8e-14 83.2 242 32.2
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 7.6e-14 82.8 282 33.0
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-13 82.0 236 32.6
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.3e-13 82.0 236 32.6
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.3e-13 82.0 265 32.1
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 4.9e-13 80.1 216 32.9
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 6.4e-13 79.7 216 32.9
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.4e-12 78.6 136 38.2
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 2.4e-12 77.8 213 33.3
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 2.4e-12 77.8 239 31.4
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 5.4e-12 76.6 223 31.8
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 7.1e-12 76.3 223 31.8
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 7.1e-12 76.3 207 32.4
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 9.2e-12 75.9 268 29.5
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 1.2e-11 75.5 214 31.8
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.6e-11 75.1 300 29.0
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 3.5e-11 73.9 262 33.2
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 6.0e-11 73.2 186 34.4
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 7.8e-11 72.8 235 32.3
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 7.8e-11 72.8 277 32.1
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 1.7e-10 71.6 278 31.7
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 1.7e-10 71.6 95 50.5
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 2.3e-10 71.2 269 29.0
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 2.3e-10 71.2 252 31.7
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 3.9e-10 70.5 226 31.0
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.9e-10 70.5 104 38.5
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 3.9e-10 70.5 293 30.7
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 5.1e-10 70.1 219 31.1
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 5.1e-10 70.1 103 39.8
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 8.7e-10 69.3 294 28.9
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 8.7e-10 69.3 111 41.4
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.1e-09 68.9 299 28.4
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 1.5e-09 68.6 282 31.9
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.9e-09 68.2 111 40.5
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 4.3e-09 67.0 115 39.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.3e-09 67.0 181 30.9
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 5.6e-09 66.6 260 31.9
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 5.6e-09 66.6 115 38.3
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 9.6e-09 65.9 141 34.8
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.2e-08 65.5 284 27.8
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.2e-08 65.5 228 30.3
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.6e-08 65.1 157 34.4
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.6e-08 65.1 291 27.8
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.1e-08 64.7 224 29.5
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.1e-08 64.7 224 29.5
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 2.8e-08 64.3 122 33.6
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 2.8e-08 64.3 229 31.4
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 3.6e-08 63.9 134 33.6
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.6e-08 63.9 148 35.1
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 3.6e-08 63.9 227 29.5
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 3.6e-08 63.9 227 29.5
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 3.6e-08 63.9 221 30.8
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 3.6e-08 63.9 114 41.2
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 4.7e-08 63.5 116 37.9
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 6.2e-08 63.2 267 27.3
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 8.1e-08 62.8 280 27.9
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 8.1e-08 62.8 261 32.2
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.1e-07 62.4 125 33.6
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-07 62.4 204 30.9
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 1.4e-07 62.0 114 38.6
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 2.4e-07 61.2 147 37.4
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 2.4e-07 61.2 105 38.1
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.1e-07 60.8 261 30.3
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.0e-07 60.5 263 30.0
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.2e-07 60.1 119 37.0
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.2e-07 60.1 100 39.0
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 6.9e-07 59.7 148 28.4
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 6.9e-07 59.7 140 32.1
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 6.9e-07 59.7 104 40.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 6.9e-07 59.7 108 35.2
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 9.0e-07 59.3 110 36.4
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.5e-06 58.5 132 33.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 2.0e-06 58.2 133 30.1
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.0e-06 58.2 106 36.8
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 2.0e-06 58.2 220 30.0
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 2.0e-06 58.2 209 29.7
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 2.6e-06 57.8 278 25.2
Lj8A559T40 Lonicera japonica HOM05D012621 ORTHO05D004349 2.6e-06 57.8 115 39.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 4.4e-06 57.0 109 34.9
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 4.4e-06 57.0 197 31.5
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 4.4e-06 57.0 170 32.4
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 4.4e-06 57.0 265 27.9
Zm00001eb126760 Zea mays HOM05D041344 ORTHO05D037183 4.4e-06 57.0 119 38.7
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 5.8e-06 56.6 164 31.7
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.8e-06 56.6 158 29.1
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 5.8e-06 56.6 279 29.0
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 9.9e-06 55.8 226 31.4
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 9.9e-06 55.8 105 34.3


User provided reference genes

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