Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.5e-308 1061.2 524 100.0
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 4.7e-270 934.1 510 89.6
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 2.7e-265 918.3 510 88.4
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 4.5e-265 917.5 510 88.2
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 2.1e-222 775.8 512 76.2
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 4.9e-211 738.0 510 70.8
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 1.2e-209 733.4 511 71.2
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 4.6e-209 731.5 512 69.3
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 1.0e-208 730.3 511 70.1
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.1e-207 726.9 506 70.8
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.5e-207 725.7 507 70.2
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 3.3e-207 725.3 514 69.6
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 5.6e-207 724.5 502 70.9
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 3.6e-206 721.8 508 69.9
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 6.9e-205 717.6 507 70.4
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 4.5e-204 714.9 487 72.5
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 1.9e-202 709.5 508 67.7
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 2.4e-202 709.1 511 66.5
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 7.1e-202 707.6 506 68.2
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 6.0e-201 704.5 513 67.6
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 1.1e-199 700.3 517 66.0
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 2.5e-199 699.1 511 66.9
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 6.2e-198 694.5 512 67.2
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 2.4e-197 692.6 511 66.9
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 1.2e-196 690.3 514 65.6
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 1.5e-196 689.9 509 65.4
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 1.4e-194 683.3 383 87.2
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 1.4e-194 683.3 510 65.3
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 1.9e-194 682.9 509 66.4
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 9.3e-194 680.6 505 66.3
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 1.2e-193 680.2 535 63.7
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 2.1e-193 679.5 516 64.7
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 3.5e-193 678.7 511 65.4
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 7.9e-193 677.6 511 65.9
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 7.9e-193 677.6 511 65.4
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 5.1e-192 674.9 513 66.3
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 1.9e-191 672.9 508 65.4
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 4.3e-191 671.8 509 66.0
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 9.6e-191 670.6 511 65.6
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 1.6e-190 669.8 510 64.7
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 2.8e-190 669.1 511 63.8
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 6.3e-190 667.9 509 64.4
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 2.4e-189 666.0 527 62.6
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 6.5e-187 657.9 509 63.5
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.9e-186 656.4 511 63.0
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 1.2e-185 653.7 503 63.2
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 1.6e-185 653.3 508 63.4
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 1.6e-185 653.3 502 64.5
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 2.1e-185 652.9 614 56.8
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 2.7e-185 652.5 502 63.5
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 1.3e-184 650.2 510 63.1
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 8.2e-182 641.0 509 61.5
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 9.1e-181 637.5 410 78.3
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 5.9e-180 634.8 509 60.9
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 7.7e-180 634.4 509 61.3
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 1.7e-179 633.3 476 67.4
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.2e-179 632.9 523 61.4
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 2.9e-179 632.5 526 60.1
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 5.0e-179 631.7 513 59.3
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 5.0e-179 631.7 470 66.0
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 6.5e-179 631.3 508 61.4
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.1e-178 630.6 519 61.3
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 1.9e-178 629.8 509 61.1
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 9.4e-178 627.5 529 59.4
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 4.6e-177 625.2 509 60.5
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 6.1e-177 624.8 467 66.6
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 7.9e-177 624.4 514 59.9
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 3.9e-176 622.1 517 59.4
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 2.0e-175 619.8 472 65.7
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 4.8e-174 615.1 551 57.2
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 3.1e-173 612.5 463 65.2
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 1.0e-171 607.4 472 64.6
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 1.4e-170 603.6 503 60.6
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 2.5e-170 602.8 451 65.6
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 3.6e-169 599.0 599 51.8
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 2.6e-167 592.8 447 65.3
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 9.7e-167 590.9 539 55.3
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 2.8e-166 589.3 521 58.2
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 5.0e-163 578.6 523 58.1
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 4.0e-160 568.9 595 53.3
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 6.3e-158 561.6 435 63.2
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.6e-156 557.0 378 71.2
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.6e-156 557.0 415 67.0
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 3.5e-156 555.8 417 65.7
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 2.9e-155 552.7 443 61.6
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 4.2e-154 548.9 476 58.8
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.8e-150 535.4 414 64.5
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 6.5e-147 525.0 419 63.7
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 1.1e-146 524.2 545 50.1
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 1.0e-144 517.7 562 48.6
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 8.8e-144 514.6 399 64.2
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 1.7e-142 510.4 396 63.6
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 4.1e-141 505.8 397 64.0
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 2.3e-139 500.0 505 51.9
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 4.0e-136 489.2 372 65.1
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 1.2e-135 487.6 380 62.4
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 8.3e-134 481.5 397 61.7
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 1.4e-133 480.7 397 60.7
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 3.1e-128 463.0 445 55.1
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 3.3e-122 443.0 527 46.1
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 5.4e-117 425.6 362 58.3
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 1.9e-114 417.2 356 58.4
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.8e-112 410.6 386 57.3
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 1.1e-101 374.8 505 44.6
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.1e-101 374.8 233 75.5
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 8.7e-91 338.6 253 67.6
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 4.0e-80 303.1 512 36.1
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 1.9e-74 284.3 238 58.4
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 7.4e-74 282.3 411 39.9
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 1.1e-69 268.5 263 53.6
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 7.7e-63 245.7 128 87.5
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 2.9e-62 243.8 129 88.4
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 8.8e-59 232.3 583 29.7
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 3.7e-57 226.9 138 82.6
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 2.8e-49 200.7 335 34.6
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 1.1e-48 198.7 154 61.0
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 7.0e-48 196.1 95 96.8
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 1.7e-41 174.9 129 59.7
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 1.8e-40 171.4 94 84.0
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 1.0e-35 155.6 140 59.3
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 2.3e-35 154.5 100 72.0
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 5.2e-35 153.3 88 80.7
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.1e-20 104.8 63 76.2
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 2.4e-16 91.3 106 48.1
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 2.3e-14 84.7 70 60.0
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 3.5e-07 60.8 42 61.9


User provided reference genes

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