Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 0.0e+00 1130.2 586 100.0
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 6.2e-263 910.6 625 79.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.4e-261 904.8 593 83.5
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 3.4e-261 904.8 600 80.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.6e-255 885.9 625 78.1
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.0e-253 879.0 615 77.6
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.0e-212 743.8 630 64.6
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 6.5e-204 714.5 679 59.5
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.7e-201 704.5 633 62.7
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.2e-200 703.7 637 60.8
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.8e-199 698.4 636 61.3
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.5e-197 692.2 636 60.8
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 7.7e-197 691.0 635 60.3
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 7.7e-197 691.0 625 61.9
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.9e-196 689.1 625 61.4
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.5e-195 686.8 634 61.0
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.2e-195 685.6 623 62.4
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 9.4e-195 684.1 635 60.0
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.8e-193 679.9 476 76.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.2e-192 677.2 631 60.2
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.5e-192 676.8 628 60.7
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.7e-191 673.3 623 60.2
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 8.3e-191 671.0 623 60.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.1e-190 670.6 617 61.8
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.7e-189 666.0 628 59.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.7e-188 663.3 624 59.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.9e-188 662.5 627 57.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.8e-188 662.1 631 60.4
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.1e-187 660.6 627 59.5
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 2.5e-187 659.4 624 58.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 5.5e-187 658.3 627 57.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 9.5e-187 657.5 618 58.9
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.6e-186 656.8 627 57.7
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.0e-185 654.1 656 57.5
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-185 653.7 629 58.3
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 8.8e-185 651.0 599 59.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 8.8e-185 651.0 615 59.3
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.6e-184 649.4 619 59.8
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.1e-182 642.1 649 58.2
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 5.4e-182 641.7 601 60.6
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.0e-180 637.5 601 60.6
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-180 636.0 625 56.3
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 3.8e-180 635.6 642 56.4
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 7.3e-179 631.3 595 60.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.2e-178 630.6 624 57.7
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 8.0e-178 627.9 614 57.0
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.3e-177 626.3 604 58.8
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 3.0e-177 625.9 609 57.6
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 8.9e-177 624.4 593 59.0
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.2e-176 624.0 610 56.4
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.2e-176 624.0 592 58.8
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.0e-176 623.2 600 58.0
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.0e-176 623.2 603 56.7
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.6e-176 622.9 622 56.4
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.6e-176 622.9 622 56.4
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 4.4e-176 622.1 601 57.4
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 9.8e-176 620.9 584 58.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.3e-175 620.5 593 58.5
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.7e-175 620.2 609 56.5
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 3.7e-175 619.0 601 58.9
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 8.3e-175 617.8 605 57.5
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.4e-174 617.1 609 56.8
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 7.0e-174 614.8 594 58.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 7.0e-174 614.8 626 56.4
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.2e-173 614.0 621 56.0
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 4.6e-173 612.1 598 56.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 7.8e-173 611.3 630 55.2
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.0e-172 609.4 638 55.2
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 3.9e-172 609.0 621 56.4
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 6.6e-172 608.2 608 56.2
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.1e-171 607.4 611 55.3
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.5e-171 607.1 629 56.8
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.9e-171 606.7 612 56.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 6.2e-170 601.7 622 55.6
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.8e-169 600.1 586 57.7
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.3e-169 599.7 596 56.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 3.1e-169 599.4 598 57.2
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.5e-168 597.0 595 55.6
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.0e-168 596.7 623 54.4
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.6e-168 596.3 581 57.3
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 3.4e-168 595.9 635 54.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 7.5e-168 594.7 599 58.9
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 3.7e-167 592.4 616 55.2
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 6.4e-167 591.7 594 55.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.2e-166 589.3 609 55.5
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 7.8e-165 584.7 622 54.5
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 6.6e-164 581.6 620 53.2
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.5e-163 580.5 630 52.5
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 5.6e-163 578.6 585 57.4
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.8e-161 573.5 606 54.8
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.1e-157 560.1 642 51.2
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 6.6e-156 555.1 620 52.6
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.0e-152 543.5 612 50.7
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 3.4e-152 542.7 639 51.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 9.9e-152 541.2 632 50.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 6.4e-151 538.5 597 55.4
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 8.4e-151 538.1 646 50.0
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 1.9e-150 537.0 621 51.0
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.4e-145 520.0 612 50.3
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 2.2e-143 513.5 638 49.5
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.8e-143 512.7 594 52.0
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 3.2e-142 509.6 629 48.6
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 9.3e-142 508.1 608 51.5
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 6.0e-141 505.4 636 46.5
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 3.0e-140 503.1 570 52.5
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 4.8e-138 495.7 505 56.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.5e-136 490.7 578 51.2
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.3e-124 450.3 439 59.0
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.8e-122 443.4 614 43.8
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-120 437.6 478 54.0
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.4e-113 414.5 630 41.4
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 9.0e-113 411.8 639 41.9
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 3.4e-112 409.8 591 44.5
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.8e-92 344.4 374 55.1
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.0e-91 340.9 265 66.4
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.6e-88 330.5 386 52.1
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-82 311.2 487 44.1
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.8e-81 307.8 555 39.1
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 7.2e-78 295.8 359 48.7
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 8.6e-71 272.3 368 43.2
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.2e-69 268.5 290 53.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.4e-57 228.4 164 72.0
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 6.0e-56 223.0 300 44.0
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 8.6e-55 219.2 329 40.4
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.6e-53 213.8 118 89.8
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.1e-48 198.0 119 78.2
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 8.9e-44 182.6 212 50.9
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.3e-42 178.7 204 52.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.3e-39 168.7 209 45.9
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 6.6e-39 166.4 235 40.9
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 8.6e-39 166.0 151 63.6
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 1.1e-38 165.6 131 67.2
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.9e-38 164.9 235 43.4
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.8e-37 161.0 160 53.8
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.2e-35 155.6 142 61.3
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 6.4e-34 149.8 122 64.8
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.1e-33 149.1 135 56.3
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.1e-33 149.1 143 53.1
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.7e-32 144.4 107 71.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.6e-32 143.7 308 32.8
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.3e-31 141.4 117 64.1
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.3e-30 137.1 227 38.3
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 5.6e-30 136.7 184 40.2
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.9e-28 129.8 124 62.9
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 9.0e-28 129.4 113 62.8
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.7e-23 115.2 86 73.3
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.9e-23 114.0 99 57.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 3.9e-23 114.0 86 73.3
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 2.5e-22 111.3 108 51.9
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.4e-20 105.5 65 83.1
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-19 102.1 76 71.1
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 4.5e-19 100.5 74 74.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.4e-17 93.6 70 65.7
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 9.3e-17 92.8 75 68.0
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 3.9e-15 87.4 69 66.7
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 8.7e-15 86.3 95 51.6
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 5.3e-12 77.0 136 36.0
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 9.0e-12 76.3 219 31.5
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.4e-09 68.2 221 28.1
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 2.1e-08 65.1 48 72.9
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.7e-08 64.7 123 35.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 6.0e-08 63.5 75 41.3
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 5.6e-06 57.0 75 48.0


User provided reference genes

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