Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.9e-255 884.0 459 100.0
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.1e-227 793.1 460 91.5
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 5.8e-200 701.0 451 83.4
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.8e-194 681.4 451 81.8
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 4.1e-193 678.3 451 81.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.2e-174 615.5 438 78.1
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.8e-131 471.9 300 84.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-130 470.7 274 90.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 2.3e-127 459.9 425 59.3
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 3.0e-127 459.5 451 55.7
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 3.0e-127 459.5 427 58.3
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.6e-127 458.4 429 58.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.5e-126 456.4 424 58.0
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 4.0e-124 449.1 419 60.1
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 6.8e-124 448.4 419 59.4
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.8e-124 448.4 429 58.7
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 6.8e-124 448.4 437 56.1
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.5e-123 447.2 424 58.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 4.4e-123 445.7 425 57.2
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.9e-122 443.0 418 58.1
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.9e-122 442.2 426 56.1
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 6.4e-122 441.8 422 55.7
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.2e-121 439.5 433 57.3
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 3.5e-120 436.0 436 55.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.7e-119 433.7 418 56.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 3.0e-119 433.0 455 51.6
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.1e-119 432.2 422 54.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 8.6e-119 431.4 419 56.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.5e-118 430.6 424 55.4
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.5e-118 430.6 417 57.1
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.6e-117 427.2 424 54.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.2e-117 425.2 411 59.1
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.1e-116 424.5 454 53.7
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.1e-116 424.5 424 54.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 5.2e-116 422.2 423 54.6
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.2e-115 421.0 454 53.3
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.2e-115 421.0 443 54.9
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.5e-115 420.6 420 54.8
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 3.4e-115 419.5 424 54.0
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 5.8e-115 418.7 431 54.3
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.9e-114 415.6 433 53.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 8.4e-114 414.8 434 53.9
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.1e-112 410.2 435 52.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.1e-112 410.2 430 52.3
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 6.6e-111 405.2 425 50.8
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.1e-110 404.4 418 52.6
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.5e-110 404.1 416 52.6
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.9e-110 403.7 319 66.5
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.5e-110 403.3 418 52.4
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.4e-108 396.7 424 50.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 3.1e-108 396.4 421 51.3
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.0e-108 396.0 431 51.3
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.0e-108 396.0 385 55.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.2e-107 394.4 313 63.9
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.2e-107 394.4 444 52.3
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.4e-107 392.9 422 50.0
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 7.6e-107 391.7 421 50.4
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.7e-106 390.6 454 48.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 6.4e-106 388.7 428 49.3
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.4e-105 387.5 424 51.9
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.9e-105 387.1 439 51.0
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 3.2e-105 386.3 330 60.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 5.4e-105 385.6 426 49.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.4e-105 385.6 459 48.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 7.1e-105 385.2 420 50.0
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.3e-105 384.8 400 53.8
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 4.6e-104 382.5 331 60.7
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.6e-104 382.5 426 49.1
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.3e-103 380.9 426 48.1
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.3e-103 380.9 403 49.9
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 2.3e-103 380.2 413 51.1
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.3e-103 380.2 407 49.4
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.0e-103 379.8 422 50.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-102 377.9 413 51.3
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.5e-102 377.5 426 48.8
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.5e-102 377.5 345 57.1
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 4.3e-102 375.9 427 48.7
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 7.3e-102 375.2 417 48.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 7.3e-102 375.2 417 48.9
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.9e-98 362.5 418 51.4
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.7e-96 356.7 437 49.9
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.8e-95 354.0 421 47.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 2.3e-95 353.6 409 52.3
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.9e-94 350.5 491 45.4
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.3e-94 349.7 329 57.4
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 7.4e-94 348.6 431 48.3
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.9e-92 342.0 515 41.9
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.2e-91 341.3 352 52.6
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.0e-91 340.5 329 55.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 5.8e-91 339.0 410 49.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 7.6e-91 338.6 414 47.3
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.0e-87 326.6 425 47.8
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.8e-85 319.3 300 57.3
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-83 314.7 380 47.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.0e-82 311.6 443 42.9
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.3e-82 311.2 410 45.6
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.7e-82 310.8 343 50.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.6e-80 302.8 258 62.4
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 7.9e-80 302.0 359 47.6
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.3e-79 300.4 263 62.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.0e-79 300.1 182 88.5
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 6.3e-77 292.4 385 47.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 9.0e-76 288.5 294 54.8
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 3.4e-75 286.6 254 60.6
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 7.2e-73 278.9 343 46.9
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.6e-72 277.7 452 40.0
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.0e-71 275.0 494 40.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.1e-68 263.5 422 41.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 4.1e-68 263.1 327 47.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.7e-67 258.8 249 55.0
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.8e-63 247.7 253 56.5
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 8.2e-61 238.8 292 48.6
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.1e-60 236.9 168 77.4
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 9.1e-60 235.3 235 55.3
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.5e-59 234.6 169 66.3
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.1e-56 224.2 162 76.5
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.2e-53 214.2 459 36.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.0e-47 193.7 240 46.2
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.3e-45 188.3 305 44.6
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 3.7e-37 160.2 417 32.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.9e-33 147.9 103 67.0
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.8e-31 139.4 429 31.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.4e-28 131.0 150 50.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 9.2e-28 129.0 384 31.5
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.6e-25 119.8 167 44.3
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.6e-22 110.9 119 51.3
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.2e-21 107.8 68 77.9
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 9.2e-20 102.4 119 47.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 2.0e-19 101.3 125 44.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 2.5e-17 94.4 124 46.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 6.4e-13 79.7 81 50.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.3e-13 79.3 75 54.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.3e-13 79.3 75 54.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-12 78.2 75 53.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.0e-12 76.3 115 43.5
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-11 75.5 75 53.3
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 6.0e-11 73.2 62 56.5
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 4.3e-09 67.0 84 50.0
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 4.4e-06 57.0 51 56.9
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.8e-06 56.6 45 62.2
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 9.9e-06 55.8 32 75.0


User provided reference genes

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