Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.8e-157 557.8 274 100.0
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 8.0e-96 354.4 344 60.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.0e-95 352.4 342 60.5
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.2e-93 346.3 184 92.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 2.2e-93 346.3 184 92.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 7.0e-92 341.3 184 91.8
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.0e-90 337.4 184 91.3
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.3e-90 337.0 184 91.3
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.3e-90 337.0 184 91.3
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.3e-90 337.0 184 91.3
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.7e-90 336.7 184 90.2
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 8.6e-90 334.3 184 89.7
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 8.6e-90 334.3 184 89.7
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.5e-89 333.6 184 89.7
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 4.3e-89 332.0 184 89.7
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 7.3e-89 331.3 184 89.1
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 9.5e-89 330.9 184 89.1
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.2e-88 330.5 184 89.7
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.2e-88 330.5 184 89.7
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.6e-88 330.1 184 89.1
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.1e-88 329.7 184 89.1
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.8e-88 329.3 184 89.1
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.8e-88 329.3 184 89.1
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.8e-88 329.3 184 89.1
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 2.8e-88 329.3 184 89.1
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 3.6e-88 328.9 184 88.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 6.1e-88 328.2 184 88.0
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.8e-87 326.6 184 89.1
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.3e-87 326.2 184 88.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.3e-87 326.2 184 88.6
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-87 325.5 318 57.9
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.2e-86 323.9 184 87.5
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.2e-86 323.9 184 87.5
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.2e-86 323.9 184 88.0
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 87.0
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.0e-86 323.2 307 61.9
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.6e-86 322.8 184 87.0
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 2.6e-86 322.8 184 87.0
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 2.6e-86 322.8 184 87.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.6e-86 322.8 184 87.0
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 3.4e-86 322.4 184 87.5
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.7e-86 321.6 184 88.0
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-85 319.7 179 88.8
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 4.6e-83 312.0 184 85.3
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.9e-81 306.6 172 89.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.8e-80 302.8 172 87.2
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.8e-80 302.8 172 87.2
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 6.2e-80 301.6 161 91.9
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.0e-80 301.2 184 84.2
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.8e-79 298.1 172 86.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.4e-78 295.4 172 86.0
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 8.3e-77 291.2 181 80.1
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.7e-75 286.2 184 80.4
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-74 282.3 184 78.8
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.6e-74 281.6 144 94.4
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 1.1e-73 280.8 148 92.6
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 3.3e-73 279.3 184 77.2
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.3e-66 257.3 247 61.9
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.6e-62 243.0 179 72.1
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-58 231.1 160 74.4
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.7e-58 230.3 143 81.1
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 4.3e-57 225.7 119 91.6
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 7.3e-57 224.9 122 90.2
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.1e-56 223.4 247 55.9
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 5.2e-55 218.8 128 84.4
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.3e-53 214.2 108 95.4
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-53 214.2 116 88.8
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 6.2e-48 195.3 103 92.2
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 4.6e-43 179.1 105 84.8
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.0e-43 178.7 154 64.9
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 2.3e-42 176.8 101 82.2
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-35 153.7 184 49.5
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 2.7e-35 153.3 90 86.7
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 7.9e-35 151.8 90 85.6
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 5.1e-34 149.1 90 83.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 5.1e-34 149.1 187 51.3
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.9e-33 147.1 90 83.3
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 5.6e-33 145.6 151 55.6
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 3.7e-32 142.9 84 85.7
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 6.2e-32 142.1 201 41.3
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-31 141.0 132 66.7
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 5.3e-31 139.0 82 85.4
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 1.2e-30 137.9 101 70.3
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.5e-30 136.0 183 51.4
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 8.4e-29 131.7 83 79.5
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 1.5e-25 120.9 71 83.1
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 9.7e-25 118.2 207 45.9
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-24 116.3 79 75.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 4.8e-24 115.9 58 96.6
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.1e-20 104.8 205 38.5
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-19 100.9 63 76.2
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.6e-19 99.8 57 84.2
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-17 94.7 67 73.1
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-16 91.3 48 85.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 3.4e-14 83.2 181 28.7
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.8e-13 79.7 56 75.0
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-13 79.0 119 42.0
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 6.5e-13 79.0 48 83.3
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 8.5e-13 78.6 41 82.9
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-12 77.4 44 75.0
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 1.2e-11 74.7 50 80.0
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 2.7e-11 73.6 50 80.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 2.7e-11 73.6 50 80.0
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.7e-11 73.6 50 80.0
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 2.7e-11 73.6 50 80.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 2.7e-11 73.6 50 80.0
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 7.9e-11 72.0 50 78.0
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 1.8e-10 70.9 35 88.6
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-10 70.1 85 44.7
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 3.9e-10 69.7 50 74.0
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 5.1e-10 69.3 50 74.0
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 1.5e-09 67.8 36 94.4
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 9.7e-09 65.1 36 86.1
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-08 64.7 39 82.1
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-08 64.3 31 87.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-08 63.2 50 70.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 6.3e-08 62.4 33 81.8
DCAR_022854 Daucus carota HOM05D000144 ORTHO05D010624 1.1e-07 61.6 40 75.0
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 1.1e-07 61.6 37 83.8
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 1.4e-07 61.2 29 93.1
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 9.1e-07 58.5 40 70.0
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.2e-06 58.2 70 41.4
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 2.6e-06 57.0 41 73.2
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 3.4e-06 56.6 51 60.8


User provided reference genes

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