Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-271 939.5 474 100.0
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.0e-251 872.1 474 92.4
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 9.8e-251 869.8 474 92.2
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.2e-248 862.8 474 92.4
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 6.2e-245 850.5 475 90.9
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.3e-238 828.2 475 89.5
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 3.2e-209 731.9 475 77.9
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 7.9e-208 727.2 474 77.4
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-207 726.9 475 77.7
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.8e-207 726.1 474 76.8
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.3e-205 719.9 474 76.6
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.6e-205 719.5 375 94.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.4e-204 716.5 474 75.9
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 6.4e-202 707.6 476 75.4
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.1e-200 702.6 476 75.8
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 6.0e-200 701.0 482 75.3
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.9e-198 696.0 475 73.7
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 2.1e-197 692.6 474 74.3
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 8.1e-197 690.6 470 74.9
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.1e-196 688.7 402 84.3
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.0e-196 688.3 474 74.1
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 5.3e-196 688.0 394 86.3
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 5.3e-196 688.0 474 74.1
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.0e-196 687.2 435 79.3
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.2e-195 686.8 437 79.2
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.2e-195 686.8 466 75.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.5e-195 686.4 435 79.1
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 5.8e-195 684.5 469 75.1
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 5.8e-195 684.5 467 75.2
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 5.8e-195 684.5 474 74.7
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.0e-194 683.7 466 74.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.7e-194 682.9 435 78.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 2.2e-194 682.6 466 75.3
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.2e-194 682.6 473 74.6
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.9e-194 681.4 425 80.7
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 6.5e-194 681.0 474 74.1
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 8.4e-194 680.6 469 74.6
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.1e-193 680.2 474 74.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 2.5e-193 679.1 415 82.2
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.2e-193 678.7 384 85.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 5.5e-193 677.9 415 81.9
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 5.5e-193 677.9 535 66.5
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 9.3e-193 677.2 389 85.9
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.2e-192 676.8 474 73.4
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.6e-192 676.4 413 81.8
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.7e-192 675.6 447 76.7
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.7e-192 675.6 474 73.2
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.7e-192 675.6 465 74.8
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.7e-192 675.6 473 73.2
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 6.0e-192 674.5 474 73.4
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 6.0e-192 674.5 473 73.2
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 7.9e-192 674.1 403 82.6
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.3e-191 673.3 384 86.5
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.8e-191 672.9 465 74.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.8e-191 672.9 404 82.4
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.3e-191 672.5 449 75.1
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 3.0e-191 672.2 426 79.1
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 5.1e-191 671.4 415 81.7
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 6.7e-191 671.0 449 75.3
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 8.7e-191 670.6 466 73.2
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 8.7e-191 670.6 430 77.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 8.7e-191 670.6 393 84.2
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 8.7e-191 670.6 412 80.8
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 8.7e-191 670.6 393 84.0
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.5e-190 669.8 384 85.4
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.5e-190 669.8 469 73.3
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.5e-190 669.8 387 85.8
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.9e-190 669.5 475 73.3
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.9e-190 669.5 416 81.2
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.3e-190 668.7 473 72.3
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 7.4e-190 667.5 470 73.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 7.4e-190 667.5 395 84.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 9.6e-190 667.2 382 85.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.3e-189 666.8 444 77.7
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.3e-189 666.8 407 80.8
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.6e-189 666.4 444 78.2
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.6e-189 666.4 472 73.9
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 2.1e-189 666.0 426 79.3
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.7e-189 665.2 393 82.4
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.8e-188 662.9 475 72.4
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 3.1e-188 662.1 410 80.0
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.1e-188 661.8 383 84.9
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 6.9e-188 661.0 477 72.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 3.4e-187 658.7 387 82.4
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.4e-187 658.7 393 81.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.9e-186 655.6 393 82.7
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.2e-185 652.1 406 79.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 7.2e-185 651.0 406 78.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 9.3e-185 650.6 385 82.3
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.1e-184 649.4 393 79.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 2.1e-184 649.4 377 83.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.7e-184 649.0 407 78.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.7e-184 649.0 391 81.1
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.6e-184 648.3 393 79.4
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 6.1e-184 647.9 440 75.5
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.3e-183 646.7 393 79.4
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.3e-183 646.0 445 73.5
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 5.1e-183 644.8 467 72.2
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 6.7e-183 644.4 382 82.2
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 3.7e-181 638.6 447 74.0
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 5.3e-180 634.8 429 74.4
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.8e-178 628.6 476 69.1
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 7.9e-176 620.9 480 66.5
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 9.1e-172 607.4 406 72.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 4.5e-171 605.1 426 71.6
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 4.4e-166 588.6 415 68.4
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.4e-164 582.8 467 67.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.4e-158 562.0 357 74.5
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.9e-153 546.6 467 64.7
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.6e-152 543.5 427 63.5
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.7e-152 542.0 472 63.6
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 5.9e-147 525.0 433 61.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 4.7e-144 515.4 376 68.9
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-143 514.2 343 77.3
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.8e-143 513.5 342 79.5
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 4.9e-141 505.4 474 59.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.0e-138 495.4 373 64.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-134 484.2 316 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 3.4e-134 482.6 425 58.1
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.8e-132 476.9 361 65.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 5.0e-130 468.8 366 63.9
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.7e-128 462.2 475 55.4
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.9e-124 450.3 276 79.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.9e-124 450.3 289 74.0
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 6.8e-119 431.8 258 81.8
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 9.2e-116 421.4 258 81.0
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.1e-112 410.2 288 72.6
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.4e-111 406.8 309 68.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.9e-105 387.1 345 60.3
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 5.1e-98 362.5 339 60.2
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 6.2e-96 355.5 357 51.3
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.4e-95 353.6 210 83.3
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 9.0e-95 351.7 329 52.9
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 9.9e-94 348.2 234 76.5
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-87 327.8 227 74.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.8e-87 327.4 213 74.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 9.3e-76 288.5 211 69.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.1e-75 287.3 178 80.9
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 3.2e-68 263.5 220 62.3
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 7.4e-65 252.3 220 60.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.5e-62 244.6 360 40.0
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 3.4e-62 243.4 124 90.3
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 2.3e-58 230.7 135 83.7
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.5e-57 228.0 291 44.3
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.1e-49 201.8 159 66.7
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-44 185.3 171 57.9
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 5.3e-39 166.4 112 76.8
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 6.5e-37 159.5 85 88.2
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 9.4e-36 155.6 109 74.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.5e-33 148.3 112 70.5
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-29 135.2 77 88.3
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 3.1e-23 114.0 84 69.0
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.9e-21 107.5 117 55.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 3.6e-19 100.5 90 55.6
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 5.2e-18 96.7 59 88.1
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 8.9e-18 95.9 59 86.4
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 5.8e-17 93.2 68 67.6
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.9e-15 88.2 58 63.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.2e-14 85.5 50 78.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 2.9e-08 64.3 44 68.2
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 5.4e-07 60.1 220 25.5


User provided reference genes

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