Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.0e-82 307.4 147 100.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-77 293.1 147 94.6
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.1e-73 277.7 150 88.0
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 5.6e-72 274.2 148 87.8
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.8e-71 271.9 144 88.2
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 6.2e-71 270.8 150 87.3
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.4e-70 269.6 148 85.8
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.8e-70 269.2 149 85.2
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-69 266.2 148 84.5
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.0e-69 265.8 148 84.5
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.0e-69 265.8 148 84.5
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.4e-69 265.0 151 83.4
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.8e-68 261.5 138 87.7
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 5.5e-67 257.7 147 79.6
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 3.0e-65 251.9 144 79.2
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.2e-63 245.7 141 79.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.1e-62 243.4 141 78.7
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.8e-62 242.7 146 74.7
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.3e-62 241.1 147 75.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 9.0e-62 240.4 147 75.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.3e-60 236.5 143 73.4
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 5.0e-60 234.6 145 74.5
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 8.5e-60 233.8 141 75.9
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.1e-59 233.4 146 72.6
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.9e-59 232.6 141 73.8
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.5e-59 232.3 146 72.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 5.5e-59 231.1 141 76.6
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.1e-58 229.2 146 71.9
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 3.6e-58 228.4 138 73.9
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 6.1e-58 227.6 135 73.3
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 7.9e-58 227.3 149 69.8
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.4e-57 226.5 147 68.0
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 3.0e-57 225.3 139 70.5
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.0e-57 225.3 141 72.3
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 3.9e-57 224.9 140 72.9
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.1e-56 223.4 141 72.3
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.1e-56 223.4 140 72.9
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.1e-56 223.4 140 71.4
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 2.5e-56 222.2 144 71.5
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 5.7e-56 221.1 141 70.9
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.3e-55 219.9 148 68.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.3e-55 219.9 143 66.4
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 4.8e-55 218.0 134 73.9
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 6.3e-55 217.6 148 68.9
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.1e-54 216.9 148 66.9
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.4e-54 216.5 144 68.8
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.8e-54 216.1 140 72.1
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.8e-54 216.1 141 72.3
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 4.1e-54 214.9 134 72.4
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 4.1e-54 214.9 142 67.6
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.1e-54 214.9 148 66.2
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.5e-53 213.0 143 67.8
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.5e-53 213.0 141 68.8
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.0e-53 212.6 144 70.1
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.6e-53 212.2 138 71.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 3.4e-53 211.8 141 67.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.5e-53 211.5 141 67.4
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 5.9e-53 211.1 133 73.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 5.9e-53 211.1 137 68.6
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.7e-53 210.7 140 70.7
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.3e-52 209.9 138 69.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.7e-52 209.5 134 72.4
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.9e-52 208.8 145 65.5
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.9e-52 208.8 139 71.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 5.0e-52 208.0 134 71.6
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 5.0e-52 208.0 133 67.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.0e-52 208.0 139 68.3
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 5.0e-52 208.0 145 64.8
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 6.5e-52 207.6 141 67.4
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 8.5e-52 207.2 138 72.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 8.5e-52 207.2 138 72.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 8.5e-52 207.2 138 72.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.1e-51 206.8 132 68.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.4e-51 206.5 136 70.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 133 72.2
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.2e-51 205.3 135 70.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.2e-51 205.3 135 70.4
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.2e-51 205.3 216 50.5
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 4.2e-51 204.9 138 69.6
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 4.2e-51 204.9 138 69.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 4.2e-51 204.9 138 69.6
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 5.5e-51 204.5 121 76.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.2e-51 204.1 134 68.7
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 7.2e-51 204.1 130 71.5
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 9.4e-51 203.8 130 71.5
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 138 66.7
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.2e-50 203.4 141 66.7
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.2e-50 203.4 141 66.7
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-50 203.0 133 70.7
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.6e-50 203.0 133 66.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 3.6e-50 201.8 133 68.4
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 3.6e-50 201.8 141 65.2
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 4.7e-50 201.4 155 61.9
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 6.1e-50 201.1 138 63.0
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 6.1e-50 201.1 141 66.0
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.9e-50 200.7 129 71.3
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.9e-50 200.7 133 69.9
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.3e-49 199.1 141 65.2
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 3.3e-48 195.3 131 66.4
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 7.4e-48 194.1 131 71.0
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.7e-47 193.0 131 66.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.7e-47 193.0 132 65.9
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.7e-47 193.0 148 60.1
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 8.2e-47 190.7 135 62.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.1e-46 190.3 144 54.9
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.8e-46 189.5 144 54.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.4e-46 189.1 140 62.9
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.3e-46 188.0 121 71.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 5.3e-46 188.0 137 59.1
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 7.0e-46 187.6 128 68.0
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.4e-43 179.9 133 60.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.9e-43 179.5 121 66.9
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 7.4e-40 167.5 112 67.9
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 6.3e-39 164.5 217 41.5
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.8e-38 162.9 126 61.1
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 6.5e-36 154.5 135 54.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 9.4e-35 150.6 136 49.3
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.2e-34 150.2 137 48.9
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 2.7e-34 149.1 138 48.6
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.0e-32 142.9 129 52.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 9.7e-32 140.6 86 76.7
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 4.8e-31 138.3 146 51.4
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 6.3e-31 137.9 80 77.5
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 5.9e-29 131.3 90 67.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.7e-28 129.8 82 73.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.7e-28 129.8 122 50.0
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.7e-28 129.8 122 50.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 5.0e-28 128.3 146 41.1
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 6.5e-28 127.9 122 49.2
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.1e-26 122.9 95 63.2
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 6.8e-25 117.9 132 43.2
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 6.8e-25 117.9 105 50.5
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.2e-24 117.1 136 41.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.0e-24 116.3 163 39.9
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-22 110.2 95 51.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.4e-22 110.2 130 43.1
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 4.2e-19 98.6 89 56.2
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 5.2e-17 91.7 74 59.5
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 4.9e-15 85.1 131 32.1
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 4.1e-14 82.0 131 30.5
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.2e-14 80.9 56 62.5
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.6e-13 80.1 56 62.5
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-12 77.0 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.6e-10 70.1 106 34.9
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 3.7e-07 58.9 37 73.0
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 1.9e-06 56.6 38 60.5


User provided reference genes

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