Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.4e-137 490.7 244 100.0
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.2e-128 461.8 269 87.7
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.9e-121 438.7 269 82.5
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.5e-119 431.8 269 81.4
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 4.6e-119 431.4 269 81.4
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 3.1e-107 392.1 270 74.8
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 1.9e-104 382.9 269 74.3
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.9e-85 319.7 272 60.7
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 4.3e-85 318.5 269 60.2
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 2.6e-82 309.3 280 57.9
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.3e-81 307.0 270 57.8
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 3.8e-81 305.4 271 57.2
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 8.5e-81 304.3 270 57.4
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 3.2e-80 302.4 227 66.1
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 4.2e-80 302.0 267 58.4
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 3.6e-79 298.9 269 56.5
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 7.9e-79 297.7 264 57.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 4.3e-77 292.0 269 56.1
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 7.4e-77 291.2 274 56.6
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 9.7e-77 290.8 273 57.9
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.7e-76 290.0 280 56.8
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 4.8e-76 288.5 270 56.3
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 4.8e-76 288.5 269 55.8
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 6.3e-76 288.1 272 55.5
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 6.3e-76 288.1 272 55.5
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 2.4e-75 286.2 271 56.5
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 3.1e-75 285.8 271 54.2
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.1e-75 285.8 272 55.1
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.1e-75 285.4 283 54.4
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 5.3e-75 285.0 272 57.0
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 9.1e-75 284.3 234 61.1
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 1.5e-74 283.5 278 53.2
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.4e-74 282.3 272 55.9
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.5e-74 282.0 259 54.8
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 5.9e-74 281.6 268 56.3
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 7.7e-74 281.2 233 61.8
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 7.7e-74 281.2 270 56.7
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.9e-73 279.3 283 53.0
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 5.0e-73 278.5 271 53.5
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 6.5e-73 278.1 282 53.9
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.1e-72 277.3 229 62.0
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.2e-72 275.4 222 62.6
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 9.4e-72 274.2 270 55.9
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.6e-71 273.5 224 59.8
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.1e-71 273.1 272 52.9
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 2.1e-71 273.1 270 53.7
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.7e-71 271.9 224 60.3
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 4.7e-71 271.9 267 55.4
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 7.9e-71 271.2 264 53.0
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 7.9e-71 271.2 271 53.9
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 1.8e-70 270.0 266 53.4
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 2.3e-70 269.6 267 55.1
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 5.1e-70 268.5 224 60.7
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 8.8e-70 267.7 235 57.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.0e-69 266.5 228 60.5
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.6e-69 266.2 224 58.5
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.4e-69 265.4 260 55.0
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.4e-69 265.4 260 55.0
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.4e-69 264.6 280 52.9
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 9.7e-69 264.2 275 53.8
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.3e-68 263.8 224 59.8
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.7e-68 263.5 268 52.6
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.2e-68 263.1 225 59.6
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 2.8e-68 262.7 229 59.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 3.7e-68 262.3 230 59.6
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 6.3e-68 261.5 224 59.4
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.4e-67 260.4 277 51.3
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 3.1e-67 259.2 225 58.7
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 3.1e-67 259.2 277 51.3
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 3.1e-67 259.2 238 56.7
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 5.3e-67 258.5 281 50.9
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.3e-67 258.5 224 58.9
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 7.0e-67 258.1 267 52.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.0e-66 256.5 275 49.8
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.6e-66 256.1 238 55.9
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.8e-65 252.3 275 49.5
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.5e-65 251.5 254 52.0
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.2e-64 248.8 233 55.4
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 9.4e-64 247.7 246 53.3
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 9.4e-64 247.7 246 53.3
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.1e-63 246.5 272 49.3
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.1e-63 246.5 275 48.7
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-62 244.2 274 49.6
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.0e-62 244.2 275 50.9
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.4e-62 243.8 265 49.4
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 3.9e-62 242.3 272 47.1
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 3.9e-62 242.3 266 49.2
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 1.4e-59 233.8 272 47.4
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 1.4e-59 233.8 272 47.4
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 1.4e-59 233.8 272 47.4
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.1e-59 232.6 323 41.2
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 7.0e-59 231.5 222 54.5
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 7.0e-59 231.5 241 52.3
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 3.8e-57 225.7 221 53.8
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 3.8e-57 225.7 222 53.2
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 8.5e-57 224.6 218 53.2
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.5e-56 223.8 221 53.4
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 2.5e-56 223.0 221 52.9
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 5.5e-56 221.9 185 57.8
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 3.6e-55 219.2 217 52.5
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 8.0e-55 218.0 247 48.2
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 3.7e-52 209.1 473 31.9
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 9.1e-51 204.5 226 50.9
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.1e-47 193.4 208 45.7
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 3.6e-47 192.6 208 45.2
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 2.8e-39 166.4 208 42.8
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.5e-37 160.6 145 54.5
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.4e-37 159.5 101 72.3
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.4e-37 159.1 106 68.9
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.7e-36 157.1 211 40.3
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.8e-35 153.7 106 67.0
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 4.1e-35 152.5 158 49.4
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.5e-32 143.3 209 38.3
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 7.3e-32 141.7 105 63.8
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.2e-31 141.0 95 68.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.6e-31 140.6 100 65.0
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 5.2e-22 109.0 95 58.9
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 4.4e-21 105.9 96 59.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 3.9e-17 92.8 81 54.3
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 4.7e-15 85.9 135 37.8
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 8.9e-14 81.6 65 61.5
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 8.9e-14 81.6 65 61.5
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 3.2e-11 73.2 231 24.2
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.6e-10 70.9 57 63.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 8.1e-07 58.5 84 38.1


User provided reference genes

Program Settings