Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 0.0e+00 1169.1 580 100.0
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 0.0e+00 1114.0 580 95.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.6e-253 878.6 569 77.0
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 8.0e-247 857.1 573 75.7
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 5.6e-240 834.3 513 80.3
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 1.7e-233 812.8 497 80.5
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.2e-194 683.7 579 60.4
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.1e-194 682.9 575 61.2
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.0e-193 680.6 579 60.3
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.4e-190 670.2 581 59.4
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 6.7e-185 651.4 515 64.5
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 7.4e-184 647.9 583 58.0
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 7.4e-184 647.9 582 58.6
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.3e-183 647.1 571 58.1
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.1e-182 644.0 575 57.6
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 1.8e-182 643.3 637 54.9
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.1e-182 642.1 564 58.9
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.2e-181 640.6 564 58.9
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.2e-180 636.3 559 58.3
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.9e-179 633.3 559 56.9
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 7.2e-179 631.3 559 56.9
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.2e-178 630.6 512 62.1
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 2.3e-177 626.3 574 57.0
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 5.1e-177 625.2 567 57.0
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 6.7e-177 624.8 542 58.7
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.5e-176 623.6 579 56.8
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 2.0e-176 623.2 512 60.0
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 3.3e-176 622.5 513 62.0
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 4.4e-176 622.1 516 62.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.3e-175 620.5 516 61.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 1.7e-175 620.2 559 56.2
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.7e-175 620.2 518 61.4
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 2.8e-175 619.4 570 57.2
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 6.3e-175 618.2 558 56.5
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.1e-174 615.9 558 56.5
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 3.1e-174 615.9 516 59.1
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 4.1e-174 615.5 559 55.5
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.2e-173 614.0 513 58.9
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 2.6e-173 612.8 576 54.7
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 2.6e-173 612.8 517 60.7
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.9e-173 611.7 577 55.6
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 1.0e-172 610.9 513 60.4
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 3.8e-172 609.0 529 59.5
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.5e-171 606.3 587 54.0
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 5.5e-171 605.1 514 59.1
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.6e-170 603.6 518 61.2
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 4.7e-170 602.1 498 62.0
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 4.7e-170 602.1 567 56.4
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.8e-169 600.1 383 77.8
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 5.2e-169 598.6 514 59.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 8.8e-169 597.8 579 54.9
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.5e-168 597.0 513 57.7
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.5e-168 597.0 519 59.0
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 2.0e-168 596.7 568 55.6
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 3.3e-168 595.9 561 56.1
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 9.7e-168 594.3 581 53.9
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.3e-167 594.0 514 59.1
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 2.2e-167 593.2 494 58.5
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 6.3e-167 591.7 559 54.6
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 9.1e-166 587.8 566 54.2
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 5.9e-165 585.1 573 55.0
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 6.5e-164 581.6 581 53.0
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 2.5e-163 579.7 515 56.3
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 9.4e-163 577.8 581 53.2
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.2e-160 570.9 501 56.5
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.4e-160 568.9 512 56.4
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.4e-160 568.9 512 56.4
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 5.7e-160 568.5 499 57.9
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 2.4e-158 563.1 535 55.1
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.3e-156 557.4 457 61.1
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 2.2e-156 556.6 570 50.5
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.5e-155 553.9 512 56.2
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.3e-153 546.6 512 55.3
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.0e-152 543.5 573 49.9
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 9.8e-152 541.2 576 52.1
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.2e-151 540.0 685 45.8
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.8e-151 539.7 561 52.0
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 3.7e-151 539.3 571 50.6
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 6.3e-151 538.5 571 49.7
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 2.4e-150 536.6 572 49.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 3.1e-150 536.2 571 49.7
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 4.5e-149 532.3 572 49.3
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 4.5e-149 532.3 572 49.3
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.0e-148 531.2 573 49.0
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 8.6e-148 528.1 563 48.7
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.1e-147 527.7 572 49.1
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 3.3e-147 526.2 567 49.2
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 8.3e-143 511.5 517 53.8
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 3.3e-139 499.6 566 49.5
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 9.5e-139 498.0 559 46.3
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 9.5e-139 498.0 587 46.3
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 4.0e-129 466.1 401 57.9
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-126 457.2 543 45.3
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 2.4e-126 456.8 573 45.0
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 9.9e-112 408.3 358 58.9
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.1e-98 364.0 521 39.3
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 7.9e-93 345.5 520 38.5
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 5.1e-92 342.8 525 37.0
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 9.6e-91 338.6 386 48.4
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 4.8e-90 336.3 339 55.2
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.3e-84 318.2 327 50.8
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 6.7e-84 315.8 277 57.8
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 4.3e-83 313.2 277 57.4
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-79 300.8 266 57.5
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 6.5e-79 299.3 292 49.0
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.9e-78 297.7 220 60.0
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 8.7e-76 288.9 541 35.7
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-75 288.1 321 49.2
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 1.4e-68 265.0 294 47.6
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 7.0e-57 226.1 370 37.6
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 7.5e-43 179.5 348 35.1
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 7.5e-43 179.5 234 47.4
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 9.4e-38 162.5 182 47.3
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.0e-36 157.5 86 82.6
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 8.0e-29 132.9 75 80.0
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 8.9e-20 102.8 93 58.1
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.4e-17 94.7 118 44.1
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.8e-16 89.7 53 79.2
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.0e-15 89.4 53 77.4
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.6e-15 86.7 111 40.5
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.9e-14 85.1 53 75.5
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.9e-14 85.1 53 75.5
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.9e-14 85.1 53 79.2
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.3e-14 84.3 101 41.6
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 6.2e-13 80.1 76 55.3
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.0e-12 77.4 39 87.2
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 8.9e-12 76.3 146 32.2
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 1.3e-10 72.4 75 49.3
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 2.1e-08 65.1 54 63.0
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 6.0e-08 63.5 249 24.1
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 1.1e-06 59.3 127 33.1
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.3e-06 57.8 53 58.5
Ca_29313_v3 Cicer arietinum L. HOM05D002042 ORTHO05D008431 3.3e-06 57.8 141 27.7


User provided reference genes

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