Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.9e-218 762.3 416 100.0
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 9.3e-197 690.3 397 92.9
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 1.0e-171 607.1 403 81.9
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 5.3e-168 594.7 401 81.3
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 8.5e-166 587.4 421 81.2
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 8.0e-164 580.9 421 80.5
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 6.6e-150 534.6 418 75.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.9e-121 438.7 406 59.6
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.3e-118 430.6 416 59.4
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.9e-117 426.8 366 65.3
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 5.2e-115 418.7 402 55.2
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 4.4e-114 415.6 383 61.1
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 5.6e-109 398.7 408 55.1
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 7.3e-109 398.3 408 54.7
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.6e-108 397.1 415 54.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.2e-108 395.2 402 57.2
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 1.1e-107 394.4 425 56.0
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.0e-106 390.2 407 54.1
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.6e-106 389.8 406 54.4
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 3.4e-106 389.4 406 53.7
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 2.2e-105 386.7 407 53.8
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 2.9e-105 386.3 407 54.1
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 4.9e-105 385.6 412 54.1
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 2.1e-103 380.2 411 54.0
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 2.1e-103 380.2 377 59.4
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.7e-103 379.8 409 55.0
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 2.7e-103 379.8 406 55.2
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.5e-103 379.4 411 54.0
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.0e-102 377.9 402 55.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.3e-102 376.7 379 55.7
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.9e-102 375.9 410 54.6
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 8.7e-102 374.8 407 55.0
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 1.1e-101 374.4 403 53.6
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.1e-101 374.4 437 53.5
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 1.3e-100 370.9 395 54.4
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 2.8e-100 369.8 415 53.3
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 6.2e-100 368.6 403 54.6
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.4e-99 367.5 391 54.7
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 5.3e-99 365.5 377 54.1
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 6.9e-99 365.2 418 50.7
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.5e-98 364.0 407 52.6
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 3.8e-97 359.4 404 55.4
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 1.4e-96 357.5 412 53.4
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 4.6e-95 352.4 364 55.2
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 8.7e-94 348.2 416 52.2
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 7.4e-93 345.1 455 48.4
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 7.4e-93 345.1 405 51.6
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 7.4e-93 345.1 375 53.1
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.8e-91 340.5 380 54.2
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.8e-91 340.5 451 46.6
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 2.4e-91 340.1 415 49.9
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.1e-91 339.7 392 50.8
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 9.0e-91 338.2 431 48.5
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 5.8e-90 335.5 382 51.8
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 7.6e-90 335.1 351 55.3
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.3e-89 334.3 464 44.8
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 4.9e-89 332.4 413 48.4
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 3.2e-88 329.7 411 48.2
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 5.5e-88 328.9 411 49.1
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 5.5e-88 328.9 417 48.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 2.1e-87 327.0 417 48.4
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 2.1e-87 327.0 417 48.4
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 2.1e-87 327.0 470 44.3
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 3.5e-87 326.2 376 50.8
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 4.6e-87 325.9 394 49.0
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 6.0e-87 325.5 457 44.6
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 7.9e-87 325.1 416 49.5
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.3e-86 324.3 408 47.8
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 3.0e-86 323.2 487 43.7
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 8.7e-86 321.6 419 47.5
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.5e-85 320.9 401 48.6
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 1.9e-85 320.5 401 48.4
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 2.5e-85 320.1 416 47.8
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 2.5e-85 320.1 416 47.8
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.3e-84 317.8 416 47.6
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 8.2e-84 315.1 423 46.3
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.1e-83 314.7 428 45.8
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.8e-83 313.9 416 47.6
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.8e-83 313.9 537 40.4
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 4.1e-83 312.8 483 42.4
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 6.9e-83 312.0 409 47.7
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 4.5e-82 309.3 398 48.7
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 7.6e-82 308.5 423 45.4
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 1.7e-81 307.4 391 48.3
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.4e-80 304.3 422 44.3
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.1e-79 300.4 414 46.9
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 2.7e-79 300.1 419 45.1
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 6.7e-78 295.4 421 44.9
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.5e-77 293.5 401 46.1
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 5.7e-77 292.4 331 50.2
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 7.7e-74 282.0 333 50.5
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 6.5e-73 278.9 389 46.3
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.1e-63 247.3 211 62.1
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 7.4e-61 238.8 184 70.1
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.1e-59 235.0 489 37.4
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.9e-57 226.9 193 62.2
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 4.8e-52 209.5 258 49.2
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.3e-36 158.3 424 31.6
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.3e-36 158.3 424 31.6
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 8.3e-36 155.6 229 45.9
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.4e-35 154.1 120 69.2
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.1e-32 145.2 144 58.3
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 3.3e-32 143.7 503 30.0
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.7e-31 139.8 124 59.7
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-29 134.4 185 43.8
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.7e-25 121.3 169 46.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 8.0e-23 112.5 84 65.5
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 6.8e-22 109.4 120 52.5
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 8.3e-20 102.4 70 71.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 6.6e-17 92.8 385 28.1
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.1e-16 92.0 575 23.7
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 7.3e-16 89.4 83 54.2
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 4.7e-15 86.7 75 58.7
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 4.0e-14 83.6 167 34.7
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-09 68.6 77 45.5
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.3e-08 63.9 111 38.7
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.8e-07 60.8 46 69.6
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 4.7e-07 60.1 83 48.2
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 1.4e-06 58.5 101 40.6
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 1.8e-06 58.2 63 52.4


User provided reference genes

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