Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 9.1e-188 660.2 364 100.0
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.4e-150 535.4 347 85.6
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.6e-136 490.0 344 80.8
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.2e-123 447.2 346 76.0
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 1.7e-106 390.2 311 69.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.9e-106 389.0 310 69.7
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 8.7e-106 387.9 311 69.1
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.1e-97 360.9 243 78.2
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.1e-97 360.9 243 78.2
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 3.7e-96 355.9 316 63.6
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.4e-95 353.2 325 62.5
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 2.6e-94 349.7 319 60.8
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 7.6e-94 348.2 335 59.1
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.5e-92 343.2 327 60.9
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 4.2e-92 342.4 338 59.5
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 2.3e-90 336.7 318 59.7
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 2.3e-90 336.7 318 59.7
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 5.1e-90 335.5 339 56.9
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 6.7e-90 335.1 325 59.4
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 8.7e-90 334.7 305 63.3
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 4.3e-89 332.4 331 58.0
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 5.7e-89 332.0 320 60.0
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 3.7e-88 329.3 308 59.7
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 6.2e-88 328.6 328 58.8
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 1.1e-87 327.8 354 54.2
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 1.4e-87 327.4 322 58.1
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 2.4e-87 326.6 319 58.0
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 5.3e-87 325.5 330 57.3
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 2.0e-86 323.6 325 58.5
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 2.6e-86 323.2 337 55.8
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 3.4e-86 322.8 316 58.5
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.7e-85 320.5 326 56.7
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 2.2e-85 320.1 307 59.6
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 2.2e-85 320.1 334 56.3
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 2.9e-85 319.7 316 58.9
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 2.9e-85 319.7 309 57.3
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 6.5e-85 318.5 318 57.2
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.4e-84 317.4 317 57.7
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.9e-84 317.0 333 56.2
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 3.2e-84 316.2 317 56.5
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.5e-84 315.5 333 55.9
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 9.3e-84 314.7 310 59.4
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 6.1e-83 312.0 321 54.5
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 6.7e-82 308.5 340 54.4
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 6.7e-82 308.5 325 55.1
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 1.9e-81 307.0 307 58.6
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 2.5e-81 306.6 310 56.8
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.3e-81 306.2 324 55.2
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 2.2e-80 303.5 308 58.4
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 2.2e-80 303.5 338 53.3
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 2.8e-80 303.1 345 53.6
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 4.8e-80 302.4 255 62.4
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 4.8e-80 302.4 315 55.9
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 6.3e-80 302.0 315 57.1
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 8.2e-80 301.6 340 53.2
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 8.2e-80 301.6 321 57.6
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 1.4e-79 300.8 313 56.9
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.4e-79 300.8 315 55.6
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.4e-79 300.8 315 56.2
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 2.4e-79 300.1 339 53.7
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 2.4e-79 300.1 219 71.7
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 3.1e-79 299.7 310 57.1
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 9.0e-79 298.1 308 56.8
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 2.0e-78 297.0 328 55.5
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 3.4e-78 296.2 336 53.6
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 3.4e-78 296.2 308 55.5
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 7.7e-78 295.0 259 62.9
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 2.2e-77 293.5 309 53.7
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.9e-76 290.4 248 61.3
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.5e-76 290.0 304 57.2
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 2.5e-76 290.0 316 53.5
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 9.4e-76 288.1 219 68.5
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 2.7e-75 286.6 317 53.0
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 2.7e-75 286.6 317 53.0
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 6.1e-75 285.4 311 52.7
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 7.9e-75 285.0 363 49.9
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 3.0e-74 283.1 328 51.8
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 3.9e-74 282.7 273 58.2
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 1.1e-73 281.2 369 49.6
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 1.1e-73 281.2 311 54.3
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 1.1e-73 281.2 318 52.8
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 9.7e-73 278.1 359 48.7
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.8e-72 276.6 319 52.0
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 3.7e-72 276.2 319 51.7
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.4e-71 274.2 369 47.7
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.4e-71 274.2 325 50.2
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 3.4e-70 269.6 280 57.9
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 4.5e-70 269.2 249 57.8
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.0e-69 268.1 353 48.2
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 2.2e-69 266.9 318 51.6
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 3.8e-69 266.2 317 51.4
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 5.0e-69 265.8 319 50.8
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 6.5e-69 265.4 318 50.0
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 6.5e-69 265.4 318 50.0
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.1e-68 264.6 326 49.1
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.9e-68 263.8 319 50.2
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 3.2e-68 263.1 339 46.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 3.2e-68 263.1 369 45.5
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 5.5e-68 262.3 317 49.8
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 5.5e-68 262.3 246 57.3
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 1.6e-67 260.8 311 52.1
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 7.9e-67 258.5 256 57.0
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 6.7e-66 255.4 343 46.1
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.0e-65 253.8 256 56.6
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 2.6e-65 253.4 355 46.2
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 4.4e-65 252.7 320 49.1
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.7e-64 250.8 218 62.4
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.7e-64 250.8 294 53.1
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.2e-64 250.4 209 62.2
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 2.8e-64 250.0 261 55.2
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 4.8e-64 249.2 335 46.9
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.1e-63 248.1 209 60.8
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.8e-63 247.3 239 59.0
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 7.2e-60 235.3 195 63.6
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 9.4e-60 235.0 378 43.9
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 1.5e-57 227.6 220 54.1
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.5e-57 227.6 306 47.1
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 1.5e-57 227.6 235 57.0
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 7.4e-57 225.3 322 46.6
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.4e-55 221.1 256 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 1.3e-48 198.0 336 39.0
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.4e-47 194.5 188 51.6
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 2.9e-45 186.8 232 56.5
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 5.0e-45 186.0 311 38.9
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-44 184.9 175 61.1
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-44 184.9 175 61.1
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 9.8e-41 171.8 170 54.7
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 3.8e-37 159.8 393 34.4
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 4.3e-28 129.8 161 51.6
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 3.1e-26 123.6 115 57.4
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 5.4e-23 112.8 138 54.3
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 5.8e-17 92.8 133 45.9
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 3.2e-15 87.0 134 46.3
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 3.2e-15 87.0 205 33.2
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.5e-14 83.6 157 38.9
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 6.0e-14 82.8 108 48.1
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 1.1e-10 72.0 116 45.7
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 9.9e-09 65.5 151 33.1
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.3e-08 65.1 149 34.2
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 8.4e-08 62.4 55 60.0
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 2.4e-07 60.8 146 36.3
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 1.2e-06 58.5 177 29.4
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 3.5e-06 57.0 79 44.3


User provided reference genes

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