Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005445g0030 Nicotiana tabacum HOM05D004476 ORTHO05D002200 2.6e-46 188.3 93 100.0
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 3.4e-14 81.6 63 68.3
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 9.9e-14 80.1 63 66.7
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 4.9e-13 77.8 45 84.4
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 6.4e-13 77.4 45 82.2
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 3.9e-10 68.2 64 57.8
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 1.1e-09 66.6 46 78.3
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 7.3e-09 63.9 63 57.1
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 7.3e-09 63.9 63 55.6
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 1.6e-08 62.8 65 52.3
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 1.6e-08 62.8 63 55.6
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 1.6e-08 62.8 43 72.1
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 2.1e-08 62.4 63 54.0
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 2.1e-08 62.4 74 47.3
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 2.8e-08 62.0 63 55.6
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 2.8e-08 62.0 74 47.3
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 3.6e-08 61.6 43 69.8
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 3.6e-08 61.6 44 70.5
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 4.8e-08 61.2 44 70.5
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 4.8e-08 61.2 65 50.8
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 4.8e-08 61.2 63 52.4
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 6.2e-08 60.8 63 52.4
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 6.2e-08 60.8 44 70.5
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 6.2e-08 60.8 63 54.0
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 6.2e-08 60.8 63 54.0
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 8.1e-08 60.5 63 54.0
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 8.1e-08 60.5 63 52.4
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 8.1e-08 60.5 63 52.4
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 8.1e-08 60.5 44 68.2
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 8.1e-08 60.5 44 68.2
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 8.1e-08 60.5 63 52.4
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 8.1e-08 60.5 44 68.2
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 8.1e-08 60.5 63 52.4
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.4e-07 59.7 44 65.9
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 1.4e-07 59.7 63 52.4
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 1.4e-07 59.7 44 68.2
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 1.8e-07 59.3 63 49.2
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 1.8e-07 59.3 44 68.2
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 1.8e-07 59.3 44 68.2
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 1.8e-07 59.3 44 68.2
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 1.8e-07 59.3 44 68.2
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 1.8e-07 59.3 44 68.2
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 1.8e-07 59.3 44 65.9
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 1.8e-07 59.3 66 47.0
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 2.4e-07 58.9 42 69.0
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 2.4e-07 58.9 42 69.0
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 68.2
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 2.4e-07 58.9 42 69.0
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 2.4e-07 58.9 44 63.6
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 3.1e-07 58.5 44 65.9
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 3.1e-07 58.5 44 68.2
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 3.1e-07 58.5 44 65.9
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 3.1e-07 58.5 63 50.8
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 3.1e-07 58.5 43 67.4
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 3.1e-07 58.5 45 66.7
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 3.1e-07 58.5 44 65.9
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 3.1e-07 58.5 44 65.9
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 3.1e-07 58.5 63 50.8
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 3.1e-07 58.5 45 64.4
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 4.0e-07 58.2 44 63.6
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 4.0e-07 58.2 44 63.6
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 4.0e-07 58.2 63 50.8
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 4.0e-07 58.2 44 65.9
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 5.3e-07 57.8 44 65.9
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 5.3e-07 57.8 61 52.5
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 5.3e-07 57.8 61 52.5
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 5.3e-07 57.8 61 52.5
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 5.3e-07 57.8 63 47.6
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 5.3e-07 57.8 63 49.2
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 6.9e-07 57.4 44 65.9
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 6.9e-07 57.4 63 50.8
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 6.9e-07 57.4 57 54.4
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 6.9e-07 57.4 44 68.2
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 6.9e-07 57.4 44 65.9
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 6.9e-07 57.4 44 65.9
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 6.9e-07 57.4 44 63.6
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 9.0e-07 57.0 44 65.9
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 9.0e-07 57.0 44 65.9
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 9.0e-07 57.0 63 49.2
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 9.0e-07 57.0 42 64.3
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 9.0e-07 57.0 63 47.6
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 1.2e-06 56.6 63 49.2
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 1.2e-06 56.6 45 60.0
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 1.2e-06 56.6 44 65.9
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 1.5e-06 56.2 42 66.7
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 1.5e-06 56.2 42 66.7
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 1.5e-06 56.2 45 64.4
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 1.5e-06 56.2 44 63.6
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 1.5e-06 56.2 44 63.6
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 1.5e-06 56.2 44 63.6
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 1.5e-06 56.2 44 65.9
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 1.5e-06 56.2 44 65.9
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 2.0e-06 55.8 42 64.3
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 2.0e-06 55.8 87 40.2
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 2.0e-06 55.8 44 63.6
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 2.0e-06 55.8 44 56.8
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 63.6
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 63.6
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 63.6
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 63.6
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 63.6
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 63.6
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 2.6e-06 55.5 63 49.2
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 2.6e-06 55.5 45 62.2
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 2.6e-06 55.5 44 61.4
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 3.4e-06 55.1 44 59.1
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 3.4e-06 55.1 44 65.9
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 3.4e-06 55.1 63 49.2
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 3.4e-06 55.1 45 62.2
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 3.4e-06 55.1 45 62.2
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 4.4e-06 54.7 42 64.3
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 4.4e-06 54.7 42 64.3
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 4.4e-06 54.7 42 64.3
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 4.4e-06 54.7 42 64.3
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 4.4e-06 54.7 45 60.0
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 4.4e-06 54.7 42 64.3
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 4.4e-06 54.7 44 63.6
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 4.4e-06 54.7 44 59.1
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 4.4e-06 54.7 44 59.1
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 5.8e-06 54.3 63 49.2
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 9.9e-06 53.5 42 61.9


User provided reference genes

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