Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.1e-116 423.3 207 100.0
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.1e-108 396.7 207 93.2
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.1e-108 396.7 207 93.7
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.4e-108 395.6 207 93.7
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 6.9e-108 394.0 207 93.7
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 4.6e-104 381.3 207 89.4
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 3.0e-79 298.9 158 90.5
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 2.6e-78 295.8 211 69.2
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 7.4e-78 294.3 153 90.8
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 6.3e-77 291.2 185 74.6
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.4e-76 289.3 211 70.1
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 3.1e-76 288.9 185 71.4
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 6.9e-76 287.7 205 67.8
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.0e-75 286.2 212 66.5
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 4.5e-75 285.0 202 70.3
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.1e-73 280.4 205 65.4
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.1e-73 280.4 216 68.5
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.9e-73 279.6 212 67.5
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.2e-73 277.7 196 69.9
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 9.4e-73 277.3 214 64.5
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.4e-73 277.3 207 66.2
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.2e-72 276.9 210 67.6
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.2e-72 276.9 212 66.0
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 1.6e-72 276.6 203 68.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.1e-72 276.2 215 66.0
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 4.7e-72 275.0 207 66.2
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.4e-71 273.5 214 63.1
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.4e-71 273.5 207 65.2
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.4e-71 273.5 207 65.2
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.3e-71 272.7 164 78.7
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 3.9e-71 271.9 179 72.6
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 2.0e-70 269.6 169 74.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.3e-70 268.9 230 63.0
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 7.4e-70 267.7 205 66.3
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.3e-69 266.9 207 65.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.7e-69 266.5 184 71.2
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.8e-69 265.8 184 70.1
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.8e-69 265.8 181 69.6
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 4.8e-69 265.0 202 64.4
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 6.3e-69 264.6 169 74.6
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 6.3e-69 264.6 207 65.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.1e-68 263.8 194 68.6
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.4e-68 263.5 205 64.4
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.8e-68 263.1 146 82.9
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 1.8e-68 263.1 146 82.2
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.4e-68 262.7 154 79.9
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 9.1e-68 260.8 164 73.2
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.2e-67 260.4 169 72.2
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.0e-67 259.6 203 65.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.6e-67 259.2 182 68.1
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.6e-67 259.2 210 61.9
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.5e-67 258.8 154 77.9
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.5e-67 258.5 146 80.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 4.5e-67 258.5 208 63.0
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.9e-67 258.1 173 69.4
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 7.7e-67 257.7 204 63.2
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.0e-66 257.3 207 64.3
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 1.3e-66 256.9 145 81.4
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-66 256.9 173 69.9
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 1.7e-66 256.5 181 68.0
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.7e-66 256.5 169 74.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 3.8e-66 255.4 217 63.6
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 5.0e-66 255.0 195 65.1
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 5.0e-66 255.0 202 65.3
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 6.5e-66 254.6 170 70.6
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 6.5e-66 254.6 194 64.4
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 8.5e-66 254.2 206 60.2
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.1e-65 253.8 214 60.7
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.9e-65 253.1 144 81.9
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 3.2e-65 252.3 146 78.1
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 4.2e-65 251.9 208 62.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 5.5e-65 251.5 185 64.9
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 9.4e-65 250.8 151 77.5
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.6e-64 250.0 144 77.8
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.1e-64 249.6 205 59.5
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 4.7e-64 248.4 146 76.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.3e-63 246.1 150 72.7
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.0e-63 245.7 146 76.0
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.0e-63 245.7 146 76.0
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 5.2e-63 245.0 146 75.3
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 8.8e-63 244.2 143 78.3
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.2e-62 243.8 211 61.6
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 8.2e-61 237.7 156 74.4
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.4e-60 236.9 144 72.2
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.4e-60 236.1 197 61.4
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 7.0e-60 234.6 123 87.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.7e-58 229.9 153 69.3
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 2.2e-58 229.6 188 61.7
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.2e-58 229.6 171 65.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 3.2e-57 225.7 183 64.5
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 4.7e-56 221.9 207 57.5
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 4.7e-56 221.9 207 57.5
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.7e-56 221.9 162 67.3
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 6.1e-56 221.5 169 66.9
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 5.2e-55 218.4 123 82.9
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.7e-53 213.4 123 78.9
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.2e-53 213.0 175 61.7
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.8e-52 209.9 123 77.2
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 2.0e-51 206.5 143 68.5
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 4.5e-51 205.3 142 62.0
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.0e-50 204.1 148 68.2
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 7.2e-49 198.0 174 57.5
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 6.1e-48 194.9 152 55.3
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 6.1e-48 194.9 145 62.8
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 8.9e-47 191.0 152 61.8
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 5.7e-46 188.3 149 61.1
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.2e-45 186.4 146 61.0
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 4.9e-45 185.3 196 49.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 9.2e-44 181.0 99 81.8
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 7.8e-43 177.9 114 75.4
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.3e-42 177.2 107 72.0
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.7e-42 176.8 118 69.5
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 2.3e-42 176.4 100 81.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.8e-42 175.6 133 60.9
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.0e-42 175.3 99 78.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.5e-41 173.7 122 67.2
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-41 173.7 122 67.2
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 7.3e-41 171.4 164 54.3
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 4.7e-40 168.7 123 65.9
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 8.0e-40 167.9 112 73.2
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 5.2e-39 165.2 112 64.3
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 6.8e-39 164.9 186 45.7
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.6e-32 143.7 99 57.6
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.9e-29 132.9 153 44.4
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.4e-28 130.6 73 79.5
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 5.4e-28 128.6 116 56.0
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.5e-27 125.9 76 76.3
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 1.0e-26 124.4 76 75.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 2.3e-26 123.2 76 75.0
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.9e-25 120.2 75 69.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 8.1e-24 114.8 68 77.9
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.1e-24 114.8 88 63.6
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 6.8e-23 111.7 85 67.1
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.0e-22 110.2 64 73.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.7e-19 99.8 86 53.5
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 3.5e-19 99.4 66 62.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.0e-18 97.8 83 59.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.1e-18 95.5 61 72.1
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 3.3e-17 92.8 72 59.7
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 7.3e-17 91.7 58 70.7
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 8.1e-16 88.2 80 51.2
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 3.5e-11 72.8 57 63.2
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.2e-08 64.3 95 38.9
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 8.1e-08 61.6 33 75.8


User provided reference genes

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