Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005423g0050 Nicotiana tabacum HOM05D003932 ORTHO05D004546 2.2e-85 318.9 159 100.0
Nitab4.5_0006421g0030 Nicotiana tabacum HOM05D003932 ORTHO05D004546 5.2e-71 271.2 160 88.8
Nitab4.5_0015647g0010 Nicotiana tabacum HOM05D003932 ORTHO05D004546 2.1e-24 116.3 135 55.6
Peaxi162Scf00021g01218 Petunia axillaris HOM05D003932 ORTHO05D004546 1.4e-23 113.6 82 70.7
PGSC0003DMG400027783 Solanum tuberosum HOM05D003932 ORTHO05D004546 4.2e-20 102.1 84 66.7
Peaxi162Scf00021g01111 Petunia axillaris HOM05D003932 ORTHO05D004546 5.4e-20 101.7 72 69.4
Peaxi162Scf00021g01219 Petunia axillaris HOM05D003932 ORTHO05D004546 6.0e-19 98.2 57 84.2
CAN.G170.13 Capsicum annuum HOM05D003932 ORTHO05D004546 2.3e-18 96.3 57 82.5
PGSC0003DMG400027784 Solanum tuberosum HOM05D003932 ORTHO05D004546 3.0e-18 95.9 57 80.7
Solyc01g091550.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 5.1e-18 95.1 57 80.7
Sopen01g037320 Solanum pennellii HOM05D003932 ORTHO05D004546 5.1e-18 95.1 57 80.7
SalBow5G0579 Salvia bowleyana HOM05D003932 ORTHO05D004546 2.8e-16 89.4 153 39.2
CSS0035798 Camellia sinensis var. sinensis HOM05D003932 ORTHO05D004546 3.1e-15 85.9 57 70.2
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla HOM05D003932 ORTHO05D004546 9.0e-15 84.3 57 71.9
Actinidia33434 Actinidia chinensis HOM05D003932 ORTHO05D004546 2.0e-14 83.2 57 70.2
PGSC0003DMG400027782 Solanum tuberosum HOM05D003932 ORTHO05D004546 3.4e-14 82.4 57 66.7
DCAR_025147 Daucus carota HOM05D003932 ORTHO05D004546 4.4e-14 82.0 57 70.2
Solyc01g091560.2 Solanum lycopersicum HOM05D003932 ORTHO05D004546 4.4e-14 82.0 57 68.4
SGA_v2.0_scaffold11G05654 Striga asiatica HOM05D003932 ORTHO05D004546 5.8e-14 81.6 57 66.7
DCAR_020430 Daucus carota HOM05D003932 ORTHO05D004546 9.9e-14 80.9 57 66.7
Lj9A578T66 Lonicera japonica HOM05D003932 ORTHO05D004546 9.9e-14 80.9 57 64.9
TWI59G0559 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 1.7e-13 80.1 58 67.2
Manes.05G038300 Manihot esculenta HOM05D003932 ORTHO05D004546 2.2e-13 79.7 58 60.3
QL08p050077 Quercus lobata HOM05D003932 ORTHO05D004546 2.2e-13 79.7 58 63.8
FAN01G0068 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.9e-13 79.3 58 60.3
MSTRG.28209 Avicennia marina HOM05D003932 ORTHO05D004546 3.8e-13 79.0 55 63.6
Dinv32438 Davidia involucrata HOM05D003932 ORTHO05D004546 3.8e-13 79.0 57 64.9
Sopen01g037330 Solanum pennellii HOM05D003932 ORTHO05D004546 3.8e-13 79.0 57 66.7
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea HOM05D003932 ORTHO05D004546 4.9e-13 78.6 58 58.6
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea HOM05D003932 ORTHO05D004546 4.9e-13 78.6 58 58.6
FAN10G0548 Fragaria x ananassa HOM05D003932 ORTHO05D004546 8.4e-13 77.8 58 58.6
Lalb_Chr10g0097321 Lupinus albus HOM05D003932 ORTHO05D004546 8.4e-13 77.8 57 63.2
Haze_15204 Corylus avellana HOM05D003932 ORTHO05D004546 1.1e-12 77.4 58 62.1
RcHm_v2.0_Chr1g0352841 Rosa chinensis HOM05D003932 ORTHO05D004546 1.1e-12 77.4 58 60.3
Sed0026606 Sechium edule HOM05D003932 ORTHO05D004546 1.1e-12 77.4 58 56.9
Cfa004206 Carpinus fangiana HOM05D003932 ORTHO05D004546 1.4e-12 77.0 58 60.3
SalBow5G4627 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.4e-12 77.0 57 61.4
TPR.G9818 Trifolium pratense HOM05D003932 ORTHO05D004546 1.4e-12 77.0 57 61.4
CiPaw.02G026900 Carya illinoinensis HOM05D003932 ORTHO05D004546 1.9e-12 76.6 57 63.2
FAN06G4428 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.9e-12 76.6 58 58.6
QL08p050106 Quercus lobata HOM05D003932 ORTHO05D004546 1.9e-12 76.6 58 58.6
Sopen01g037340 Solanum pennellii HOM05D003932 ORTHO05D004546 1.9e-12 76.6 57 64.9
ECA236G4160 Erigeron canadensis HOM05D003932 ORTHO05D004546 2.4e-12 76.3 57 59.6
Medtr8g032450 Medicago truncatula HOM05D003932 ORTHO05D004546 2.4e-12 76.3 58 60.3
Medtr8g433000 Medicago truncatula HOM05D003932 ORTHO05D004546 2.4e-12 76.3 58 60.3
Migut.N01424 Erythranthe guttata HOM05D003932 ORTHO05D004546 3.2e-12 75.9 57 61.4
CANSAT56G2307 Cannabis sativa HOM05D003932 ORTHO05D004546 4.2e-12 75.5 57 59.6
FvH4_7g13461 Fragaria vesca HOM05D003932 ORTHO05D004546 4.2e-12 75.5 58 56.9
Glyma.03G015500 Glycine max HOM05D003932 ORTHO05D004546 4.2e-12 75.5 57 59.6
RcHm_v2.0_Chr1g0352831 Rosa chinensis HOM05D003932 ORTHO05D004546 4.2e-12 75.5 58 58.6
Eucgr.E00193 Eucalyptus grandis HOM05D003932 ORTHO05D004546 5.4e-12 75.1 58 55.2
Glyma.07G075500 Glycine max HOM05D003932 ORTHO05D004546 5.4e-12 75.1 57 59.6
Lsat_1_v5_gn_7_5520 Lactuca sativa HOM05D003932 ORTHO05D004546 7.1e-12 74.7 57 57.9
Lsat_1_v5_gn_7_5540 Lactuca sativa HOM05D003932 ORTHO05D004546 7.1e-12 74.7 57 57.9
TWI14G0637 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 7.1e-12 74.7 58 60.3
FvH4_7g13460 Fragaria vesca HOM05D003932 ORTHO05D004546 9.3e-12 74.3 58 58.6
Lj1g0003765 Lotus japonicus HOM05D003932 ORTHO05D004546 9.3e-12 74.3 58 55.2
Lj3g0012135 Lotus japonicus HOM05D003932 ORTHO05D004546 9.3e-12 74.3 57 57.9
Manes.05G038600 Manihot esculenta HOM05D003932 ORTHO05D004546 9.3e-12 74.3 58 56.9
Oeu053298.1 Olea europaea HOM05D003932 ORTHO05D004546 9.3e-12 74.3 57 56.1
Sed0002580 Sechium edule HOM05D003932 ORTHO05D004546 9.3e-12 74.3 58 51.7
Cfa004205 Carpinus fangiana HOM05D003932 ORTHO05D004546 1.2e-11 73.9 58 58.6
Solyc01g091570.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 1.2e-11 73.9 57 63.2
Prupe.2G158100 Prunus persica HOM05D003932 ORTHO05D004546 1.6e-11 73.6 58 56.9
EL10Ac1g00517 Beta vulgaris HOM05D003932 ORTHO05D004546 2.1e-11 73.2 58 56.9
CiPaw.02G027200 Carya illinoinensis HOM05D003932 ORTHO05D004546 2.1e-11 73.2 57 59.6
FAN06G3956 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.1e-11 73.2 58 56.9
FAN10G1165 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.1e-11 73.2 58 58.6
GSVIVG01027495001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.1e-11 73.2 58 53.4
Ciclev10022587m.g Citrus clementina HOM05D003932 ORTHO05D004546 2.7e-11 72.8 58 58.6
Psat4g153440 Pisum sativum HOM05D003932 ORTHO05D004546 2.7e-11 72.8 57 56.1
Prupe.2G157800 Prunus persica HOM05D003932 ORTHO05D004546 2.7e-11 72.8 58 56.9
Sed0003987 Sechium edule HOM05D003932 ORTHO05D004546 2.7e-11 72.8 58 58.6
VMungo0331G1015 Vigna mungo HOM05D003932 ORTHO05D004546 2.7e-11 72.8 57 57.9
GSVIVG01027494001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.7e-11 72.8 58 51.7
GSVIVG01027496001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.7e-11 72.8 58 55.2
Atru.chr5.428 Acer truncatum HOM05D003932 ORTHO05D004546 3.5e-11 72.4 58 53.4
Cc00_g12140 Coffea canephora HOM05D003932 ORTHO05D004546 3.5e-11 72.4 58 58.6
Duzib133G0425 Durio zibethinus HOM05D003932 ORTHO05D004546 3.5e-11 72.4 58 53.4
vmacro20959 Vaccinium macrocarpon HOM05D003932 ORTHO05D004546 3.5e-11 72.4 57 59.6
AUR62022757 Chenopodium quinoa HOM05D003932 ORTHO05D004546 4.6e-11 72.0 57 56.1
Haze_15203 Corylus avellana HOM05D003932 ORTHO05D004546 4.6e-11 72.0 58 58.6
Psat4g153400 Pisum sativum HOM05D003932 ORTHO05D004546 4.6e-11 72.0 57 56.1
QL08p050131 Quercus lobata HOM05D003932 ORTHO05D004546 4.6e-11 72.0 58 55.2
AT3G61200 Arabidopsis thaliana HOM05D003932 ORTHO05D004546 6.0e-11 71.6 58 50.0
MELO3C006135.2 Cucumis melo HOM05D003932 ORTHO05D004546 7.9e-11 71.2 58 55.2
EL10Ac1g00516 Beta vulgaris HOM05D003932 ORTHO05D004546 1.0e-10 70.9 58 53.4
Ca_25783_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 1.0e-10 70.9 57 54.4
Aa31LG10G15280 Aethionema arabicum HOM05D003932 ORTHO05D004546 1.3e-10 70.5 58 51.7
FAN06G0832 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.3e-10 70.5 58 55.2
MD01G1049100 Malus domestica HOM05D003932 ORTHO05D004546 1.3e-10 70.5 58 55.2
CsaV3_3G009140 Cucumis sativus L. HOM05D003932 ORTHO05D004546 1.7e-10 70.1 58 56.9
FAN01G1053 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.7e-10 70.1 58 55.2
Lalb_Chr19g0127151 Lupinus albus HOM05D003932 ORTHO05D004546 1.7e-10 70.1 58 50.0
Nitab4.5_0005423g0070 Nicotiana tabacum HOM05D003932 ORTHO05D004546 1.7e-10 70.1 53 67.9
SalBow5G2036 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.7e-10 70.1 56 55.4
Hund16950 Selenicereus undatus HOM05D003932 ORTHO05D004546 1.7e-10 70.1 53 60.4
Atru.chr5.432 Acer truncatum HOM05D003932 ORTHO05D004546 3.0e-10 69.3 58 53.4
MD07G1126000 Malus domestica HOM05D003932 ORTHO05D004546 3.0e-10 69.3 58 51.7
Phvul.010G093700 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 3.0e-10 69.3 57 52.6
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea HOM05D003932 ORTHO05D004546 3.9e-10 68.9 56 55.4
Manes.05G038400 Manihot esculenta HOM05D003932 ORTHO05D004546 3.9e-10 68.9 56 57.1
Thecc.01G365900 Theobroma cacao HOM05D003932 ORTHO05D004546 3.9e-10 68.9 58 55.2
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea HOM05D003932 ORTHO05D004546 5.1e-10 68.6 56 55.4
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea HOM05D003932 ORTHO05D004546 5.1e-10 68.6 56 55.4
Cpa.g.sc18.210 Carica papaya HOM05D003932 ORTHO05D004546 5.1e-10 68.6 58 51.7
Ca_07852_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 5.1e-10 68.6 55 52.7
Glyma.07G075400 Glycine max HOM05D003932 ORTHO05D004546 5.1e-10 68.6 57 56.1
Atru.chr5.429 Acer truncatum HOM05D003932 ORTHO05D004546 6.6e-10 68.2 58 50.0
Atru.chr5.430 Acer truncatum HOM05D003932 ORTHO05D004546 6.6e-10 68.2 58 50.0
Carub.0005s2787 Capsella rubella HOM05D003932 ORTHO05D004546 6.6e-10 68.2 58 48.3
AUR62022756 Chenopodium quinoa HOM05D003932 ORTHO05D004546 6.6e-10 68.2 58 53.4
COL.COLO4_12605 Corchorus olitorius HOM05D003932 ORTHO05D004546 6.6e-10 68.2 58 55.2
arahy.Tifrunner.gnm1.ann1.VZ643L Arachis hypogaea HOM05D003932 ORTHO05D004546 8.7e-10 67.8 56 53.6
MSTRG.28210 Avicennia marina HOM05D003932 ORTHO05D004546 8.7e-10 67.8 56 51.8
AUR62004306 Chenopodium quinoa HOM05D003932 ORTHO05D004546 8.7e-10 67.8 58 53.4
Potri.002G155500 Populus trichocarpa HOM05D003932 ORTHO05D004546 8.7e-10 67.8 58 58.6
Cfa004207 Carpinus fangiana HOM05D003932 ORTHO05D004546 1.1e-09 67.4 58 53.4
Potri.014G078900 Populus trichocarpa HOM05D003932 ORTHO05D004546 1.1e-09 67.4 58 53.4
Ah.02g122980 Amaranthus hybridus HOM05D003932 ORTHO05D004546 1.5e-09 67.0 58 50.0
Gohir.A11G086400 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.5e-09 67.0 58 53.4
Sp5g02170 Schrenkiella parvula HOM05D003932 ORTHO05D004546 1.5e-09 67.0 58 50.0
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea HOM05D003932 ORTHO05D004546 1.9e-09 66.6 56 53.6
Sabra14G0057100 Salix brachista HOM05D003932 ORTHO05D004546 1.9e-09 66.6 58 53.4
TAR629G2445 Trochodendron aralioides HOM05D003932 ORTHO05D004546 1.9e-09 66.6 57 54.4
ECA236G1648 Erigeron canadensis HOM05D003932 ORTHO05D004546 3.3e-09 65.9 57 52.6
unitig_22.g6806 Utricularia gibba HOM05D003932 ORTHO05D004546 3.3e-09 65.9 58 50.0
BcaC02g10211 Brassica carinata HOM05D003932 ORTHO05D004546 4.3e-09 65.5 58 48.3
A04p01220 Brassica napus HOM05D003932 ORTHO05D004546 4.3e-09 65.5 58 48.3
C04p31500 Brassica napus HOM05D003932 ORTHO05D004546 4.3e-09 65.5 58 48.3
BolC4t24695H Brassica oleracea HOM05D003932 ORTHO05D004546 4.3e-09 65.5 58 48.3
BraA04t15840Z Brassica rapa HOM05D003932 ORTHO05D004546 4.3e-09 65.5 58 48.3
Sc23g0003150 Simmondsia chinensis HOM05D003932 ORTHO05D004546 4.3e-09 65.5 55 52.7
Manes.05G038500 Manihot esculenta HOM05D003932 ORTHO05D004546 5.6e-09 65.1 58 50.0
Gorai.007G096600 Gossypium raimondii HOM05D003932 ORTHO05D004546 9.6e-09 64.3 58 51.7
AL5G43470 Arabidopsis lyrata HOM05D003932 ORTHO05D004546 1.6e-08 63.5 58 44.8
CARHR171510 Cardamine hirsuta HOM05D003932 ORTHO05D004546 1.6e-08 63.5 53 49.1
Glyma.18G224900 Glycine max HOM05D003932 ORTHO05D004546 1.6e-08 63.5 55 49.1
Gohir.D08G151100 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.6e-08 63.5 58 44.8
Gohir.D11G090600 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.6e-08 63.5 58 50.0
Gorai.004G156800 Gossypium raimondii HOM05D003932 ORTHO05D004546 1.6e-08 63.5 58 44.8
Rhsim01G0152800 Rhododendron simsii HOM05D003932 ORTHO05D004546 2.8e-08 62.8 48 62.5
Zm00001eb306670 Zea mays HOM05D003932 ORTHO05D004546 2.8e-08 62.8 57 52.6
VMungo1383G1115 Vigna mungo HOM05D003932 ORTHO05D004546 6.2e-08 61.6 58 44.8
Aqoxy7G00392 Aquilegia oxysepala HOM05D003932 ORTHO05D004546 8.1e-08 61.2 54 51.9
Oeu056332.1 Olea europaea HOM05D003932 ORTHO05D004546 1.4e-07 60.5 45 60.0
Os07g0463500 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 2.4e-07 59.7 57 52.6
SalBow5G2663 Salvia bowleyana HOM05D003932 ORTHO05D004546 2.4e-07 59.7 59 45.8
SalBow5G3861 Salvia bowleyana HOM05D003932 ORTHO05D004546 2.4e-07 59.7 59 45.8
PSO478G2301 Papaver somniferum HOM05D003932 ORTHO05D004546 3.1e-07 59.3 57 47.4
Os07g0462700 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 5.3e-07 58.5 56 51.8
PSO782G0460 Papaver somniferum HOM05D003932 ORTHO05D004546 9.0e-07 57.8 58 43.1
QL08p050127 Quercus lobata HOM05D003932 ORTHO05D004546 3.4e-06 55.8 86 36.0
MBI04_g04735_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 4.5e-06 55.5 57 47.4
PSO478G3215 Papaver somniferum HOM05D003932 ORTHO05D004546 7.6e-06 54.7 58 39.7
HPP92_025613 Vanilla planifolia HOM05D003932 ORTHO05D004546 9.9e-06 54.3 56 46.4


User provided reference genes

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