Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.7e-35 152.1 78 100.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.8e-35 151.0 78 98.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.6e-33 145.6 78 92.3
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.6e-33 145.6 78 92.3
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.0e-32 142.9 78 91.0
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.0e-32 142.9 78 91.0
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 5.2e-32 140.6 79 92.4
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 6.8e-32 140.2 78 88.5
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.5e-31 139.0 78 88.5
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 9.8e-31 136.3 73 93.2
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-28 129.0 70 91.4
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.0e-28 128.6 79 86.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.0e-27 126.3 79 84.8
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.0e-27 126.3 79 84.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.9e-26 122.1 79 78.5
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.0e-24 116.3 79 74.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.6e-20 102.4 78 65.4
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-20 101.7 78 66.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-20 101.7 78 66.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.5e-20 101.3 78 69.2
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.5e-20 101.3 78 67.9
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 4.5e-20 100.9 78 64.1
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 4.5e-20 100.9 80 66.2
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 5.9e-20 100.5 78 62.8
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 5.9e-20 100.5 78 66.7
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.0e-19 99.8 78 65.4
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.3e-19 99.4 78 66.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.9e-19 98.2 78 64.1
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.9e-19 98.2 76 64.5
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 3.8e-19 97.8 78 66.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 5.0e-19 97.4 78 64.1
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.6e-19 96.7 78 62.8
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 8.6e-19 96.7 78 61.5
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 8.6e-19 96.7 79 65.8
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.1e-18 96.3 78 60.3
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-18 96.3 78 60.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-18 96.3 78 62.8
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.5e-18 95.9 78 61.5
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.9e-18 95.5 78 62.8
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.9e-18 95.5 79 62.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.5e-18 95.1 78 64.1
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.5e-18 95.1 78 61.5
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.3e-18 94.7 78 60.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.3e-18 94.7 78 60.3
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 4.2e-18 94.4 78 60.3
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.2e-18 94.4 77 61.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 5.5e-18 94.0 78 65.4
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 5.5e-18 94.0 78 61.5
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.5e-18 94.0 78 65.4
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.2e-18 93.6 78 61.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 7.2e-18 93.6 78 61.5
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 9.5e-18 93.2 77 63.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 9.5e-18 93.2 78 61.5
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 9.5e-18 93.2 78 61.5
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.5e-18 93.2 77 62.3
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 9.5e-18 93.2 80 63.8
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 61.5
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.6e-17 92.4 78 60.3
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.8e-17 91.7 78 60.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.8e-17 91.7 81 59.3
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.7e-17 90.9 78 64.1
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 6.1e-17 90.5 78 59.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.0e-17 90.1 78 60.3
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.0e-17 90.1 77 59.7
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.0e-16 89.7 78 59.0
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.0e-16 89.7 78 60.3
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.0e-16 89.7 71 63.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.0e-16 89.7 77 59.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.4e-16 89.4 78 60.3
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.8e-16 89.0 77 59.7
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.8e-16 89.0 78 60.3
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.0e-16 87.8 78 59.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 5.2e-16 87.4 78 59.0
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 6.8e-16 87.0 78 56.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.2e-15 86.3 77 61.0
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.2e-15 86.3 78 59.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.2e-15 86.3 82 54.9
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-15 86.3 76 59.2
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-15 86.3 78 59.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.4e-15 84.3 73 61.6
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 4.4e-15 84.3 80 52.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 5.7e-15 84.0 50 72.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 7.5e-15 83.6 80 57.5
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 7.5e-15 83.6 63 65.1
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 9.8e-15 83.2 78 59.0
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 78 52.6
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.7e-14 82.4 78 57.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.7e-14 82.4 64 59.4
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 78 55.1
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-14 82.0 72 55.6
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-14 81.6 78 53.8
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.9e-14 81.6 47 74.5
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.9e-14 80.9 47 74.5
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 6.3e-14 80.5 47 72.3
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 8.3e-14 80.1 78 52.6
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-13 79.7 77 53.2
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.4e-13 78.6 74 55.4
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.4e-13 78.6 80 55.0
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.4e-13 78.6 76 55.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 3.2e-13 78.2 72 58.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.2e-13 78.2 69 50.7
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.1e-13 77.8 74 55.4
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 4.1e-13 77.8 72 54.2
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 4.1e-13 77.8 72 54.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 4.1e-13 77.8 72 54.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 5.4e-13 77.4 47 72.3
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 7.0e-13 77.0 72 54.2
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-13 77.0 72 54.2
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-13 77.0 72 54.2
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-13 77.0 72 54.2
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 7.0e-13 77.0 72 54.2
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 7.0e-13 77.0 67 58.2
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 9.2e-13 76.6 72 54.2
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 9.2e-13 76.6 47 70.2
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 9.2e-13 76.6 72 54.2
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 9.2e-13 76.6 66 62.1
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 1.2e-12 76.3 70 52.9
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.2e-12 76.3 72 45.8
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.6e-12 75.9 67 58.2
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-12 75.9 77 54.5
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.6e-12 75.9 75 48.0
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.6e-12 75.9 78 52.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.0e-12 75.5 78 53.8
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.6e-12 74.3 78 50.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 4.6e-12 74.3 47 70.2
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 5.9e-12 73.9 47 70.2
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 5.9e-12 73.9 68 55.9
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.8e-12 73.6 45 68.9
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.0e-11 73.2 49 65.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.0e-11 73.2 78 51.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.0e-11 73.2 50 68.0
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.7e-11 72.4 78 50.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 5.0e-11 70.9 76 47.4
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 5.0e-11 70.9 61 54.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 6.6e-11 70.5 68 54.4
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.1e-10 69.7 47 61.7
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.9e-10 68.9 76 47.4
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.5e-10 68.6 44 70.5
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 2.5e-10 68.6 44 70.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-10 68.2 44 68.2
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-10 68.2 44 68.2
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-10 68.2 44 68.2
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-10 68.2 44 68.2
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.3e-10 68.2 44 68.2
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.3e-10 68.2 61 57.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 5.6e-10 67.4 78 50.0
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 5.6e-10 67.4 60 55.0
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 7.3e-10 67.0 59 62.7
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 8.0e-09 63.5 69 49.3
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.4e-08 62.8 34 85.3
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 4.4e-07 57.8 56 50.0


User provided reference genes

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