Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.6e-135 486.1 244 100.0
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 4.7e-132 474.6 244 97.1
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.5e-125 453.0 244 91.8
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.3e-121 439.9 244 89.3
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.2e-121 439.1 244 88.1
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 2.9e-121 438.7 244 89.3
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.9e-121 438.7 244 89.3
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 5.4e-104 381.3 236 77.5
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 7.9e-103 377.5 244 74.6
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.3e-102 375.9 226 79.2
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 5.6e-101 371.3 244 74.2
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 1.3e-100 370.2 244 72.5
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 1.6e-100 369.8 244 74.2
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 2.1e-100 369.4 225 77.3
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.4e-99 366.7 224 75.9
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.4e-99 365.9 226 75.2
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 2.4e-99 365.9 244 72.1
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 5.3e-99 364.8 227 77.5
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 9.0e-99 364.0 225 76.9
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.2e-98 363.6 225 76.4
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 2.0e-98 362.8 230 75.7
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 5.8e-98 361.3 229 74.7
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 9.9e-98 360.5 222 75.7
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.3e-97 360.1 224 76.8
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.7e-97 359.8 224 77.2
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.9e-97 359.0 224 74.1
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 8.4e-97 357.5 224 73.7
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.4e-96 356.7 226 75.2
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 2.4e-96 355.9 226 75.2
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 2.4e-96 355.9 226 74.8
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 2.4e-96 355.9 224 73.2
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 3.2e-96 355.5 244 69.7
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 3.2e-96 355.5 235 72.3
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 7.1e-96 354.4 235 72.8
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.2e-95 353.6 234 74.4
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.6e-95 353.2 244 70.5
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.6e-95 353.2 224 73.2
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.1e-95 352.8 235 71.5
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 6.0e-95 351.3 226 73.9
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 6.0e-95 351.3 232 72.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.8e-94 349.7 226 73.9
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 1.8e-94 349.7 230 71.3
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 2.3e-94 349.4 226 73.0
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.3e-94 349.4 226 73.9
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 3.0e-94 349.0 240 68.8
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 3.0e-94 349.0 224 75.0
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 3.9e-94 348.6 225 73.8
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 5.1e-94 348.2 225 72.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.9e-93 346.3 224 73.2
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 4.3e-93 345.1 248 67.7
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 7.4e-93 344.4 244 66.4
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.3e-92 343.6 238 67.6
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.1e-92 342.8 226 70.4
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 4.8e-92 341.7 226 71.2
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 6.2e-92 341.3 226 70.4
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 6.2e-92 341.3 226 70.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.1e-91 340.5 222 72.5
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.4e-91 340.1 229 70.7
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.4e-91 340.1 244 64.8
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.4e-91 340.1 224 72.3
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.4e-91 340.1 244 66.8
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.8e-91 339.7 229 71.6
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 3.1e-91 339.0 222 72.1
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 4.0e-91 338.6 229 70.3
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 4.0e-91 338.6 229 70.3
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 4.0e-91 338.6 229 70.3
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 4.0e-91 338.6 229 70.3
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 4.0e-91 338.6 222 74.3
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 6.9e-91 337.8 226 70.8
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 6.9e-91 337.8 226 70.8
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 6.9e-91 337.8 244 66.0
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 9.0e-91 337.4 229 70.3
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.2e-90 337.0 234 66.2
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.2e-90 337.0 226 69.0
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 4.5e-90 335.1 226 66.8
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 5.8e-90 334.7 244 65.6
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.2e-89 332.8 245 64.9
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 2.9e-89 332.4 245 65.3
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.8e-89 332.0 223 69.1
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.4e-88 330.1 233 68.2
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 7.1e-88 327.8 228 68.0
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 7.1e-88 327.8 263 63.1
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.6e-87 326.6 214 74.3
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.0e-86 323.9 229 68.1
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.3e-86 322.8 222 68.0
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 6.9e-83 311.2 263 62.4
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 3.4e-82 308.9 227 66.1
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.0e-81 307.4 222 65.8
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 5.0e-81 305.1 211 68.2
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 2.1e-79 299.7 244 64.3
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 7.4e-77 291.2 195 73.3
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 6.3e-76 288.1 197 70.6
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.1e-75 287.3 232 57.8
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 9.1e-75 284.3 218 64.2
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 8.5e-73 277.7 190 71.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.0e-65 254.2 224 54.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.9e-65 252.7 182 67.6
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 4.2e-64 248.8 155 74.8
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 5.5e-64 248.4 222 56.3
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.7e-60 235.7 226 55.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 2.0e-58 229.9 226 53.5
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.7e-55 219.5 226 52.2
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 3.1e-51 206.1 155 63.9
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 5.0e-49 198.7 239 48.1
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-48 197.6 138 68.8
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 9.4e-48 194.5 262 41.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.1e-47 193.4 230 46.5
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 6.1e-47 191.8 233 45.9
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-44 184.1 128 69.5
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 4.2e-40 169.1 224 41.1
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.3e-38 163.3 197 48.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 5.0e-33 145.6 267 36.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 8.6e-33 144.8 176 44.9
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 3.2e-27 126.3 114 57.9
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-24 116.7 80 68.8
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 8.9e-22 108.2 73 68.5
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 8.3e-20 101.7 59 78.0
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 8.6e-17 91.7 66 66.7
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.1e-14 84.7 127 41.7
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 5.8e-13 79.0 61 63.9
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.6e-09 65.5 117 32.5
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 8.6e-09 65.1 47 57.4
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 4.3e-08 62.8 50 64.0
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 8.1e-07 58.5 39 69.2
ATR0745G056 Amborella trichopoda HOM05D004879 ORTHO05D065264 8.9e-06 55.1 39 64.1


User provided reference genes

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