Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 0.0e+00 1253.4 659 100.0
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 0.0e+00 1231.1 659 95.6
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.1e-308 1062.8 663 84.6
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.0e-306 1056.2 664 81.5
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 4.3e-305 1050.8 608 89.1
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 9.3e-300 1033.1 543 91.3
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.5e-299 1031.2 543 91.0
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 8.5e-261 903.7 683 69.7
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.5e-260 902.1 685 68.6
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.5e-260 902.1 685 68.6
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.3e-256 889.8 671 67.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.8e-256 888.6 671 66.5
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.1e-255 884.8 669 71.4
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 4.5e-254 881.3 526 79.3
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.3e-253 879.8 651 71.1
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 9.4e-252 873.6 683 67.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.6e-251 872.8 683 67.8
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 3.7e-248 861.7 681 64.9
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 4.8e-248 861.3 681 64.9
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.3e-248 860.9 678 66.7
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.1e-247 858.2 680 64.9
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 4.1e-247 858.2 680 65.0
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-246 856.7 680 64.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 3.5e-246 855.1 670 67.3
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 7.7e-246 854.0 641 68.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 7.7e-246 854.0 549 74.5
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.6e-245 850.9 671 64.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.2e-244 848.2 688 65.6
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.2e-244 848.2 552 75.4
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.5e-244 847.8 683 63.3
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 7.2e-244 847.4 674 65.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 9.5e-244 847.0 673 64.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-243 846.7 674 65.1
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.6e-243 845.1 673 65.2
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 6.1e-243 844.3 674 64.2
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.0e-242 843.6 547 72.4
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.8e-242 842.8 680 64.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.8e-242 842.8 546 73.1
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 2.3e-242 842.4 687 67.4
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.3e-242 842.4 676 63.5
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.2e-241 840.1 671 64.4
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.5e-241 839.7 674 63.9
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.5e-241 839.7 673 64.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.0e-241 839.3 680 63.8
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-241 839.3 680 63.8
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.4e-241 838.2 677 63.7
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.7e-240 836.3 688 63.4
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.8e-240 835.5 678 63.6
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.8e-240 835.5 680 63.5
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 4.9e-240 834.7 673 63.7
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 4.1e-239 831.6 549 72.5
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 5.4e-239 831.2 558 70.4
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.4e-239 831.2 680 63.8
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 9.2e-239 830.5 674 65.0
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.0e-238 829.3 551 71.3
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 7.8e-238 827.4 679 62.9
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.9e-237 825.5 549 73.4
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.6e-237 824.3 687 62.0
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.5e-236 823.2 679 62.2
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 2.5e-236 822.4 557 70.6
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.1e-235 819.3 680 63.7
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.8e-235 818.9 549 71.4
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 4.7e-235 818.1 559 69.6
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.1e-235 817.8 681 62.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 3.0e-234 815.5 688 61.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.2e-233 813.5 675 63.7
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.2e-232 809.3 550 71.6
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.4e-232 807.7 551 72.2
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.9e-231 806.2 551 71.1
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.0e-230 802.7 559 69.9
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.1e-228 797.0 558 69.4
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.1e-228 797.0 558 69.4
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.5e-228 795.8 549 71.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 4.7e-227 791.6 665 61.5
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 4.7e-227 791.6 680 61.2
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 3.1e-226 788.9 680 62.1
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 4.0e-226 788.5 537 70.2
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 4.4e-225 785.0 674 61.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 5.8e-225 784.6 678 61.5
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.2e-224 782.7 672 61.0
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.2e-224 782.7 632 63.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 8.3e-224 780.8 689 59.9
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.7e-222 775.8 664 60.8
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 2.7e-222 775.8 564 68.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 6.0e-222 774.6 561 68.8
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.3e-221 772.7 683 60.0
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.0e-221 772.3 557 69.3
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.9e-220 769.6 541 70.6
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 5.6e-220 768.1 561 68.3
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 7.3e-220 767.7 549 69.0
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 7.3e-220 767.7 681 61.1
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-219 766.9 681 60.5
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.2e-219 766.9 681 60.5
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.1e-219 766.1 681 60.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 2.8e-219 765.8 574 66.9
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 5.8e-217 758.1 572 66.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 5.8e-217 758.1 549 67.6
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.7e-216 756.5 550 67.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 5.4e-215 751.5 552 67.0
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.7e-213 746.5 673 60.3
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.0e-209 733.0 671 61.7
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.4e-209 732.3 556 66.2
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 3.4e-209 732.3 542 65.3
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 5.8e-209 731.5 552 65.6
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 8.4e-208 727.6 530 68.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.2e-206 723.8 680 55.6
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-206 723.8 517 70.0
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 5.1e-205 718.4 681 59.8
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-204 716.5 552 64.5
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.7e-203 711.8 494 70.9
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.2e-199 699.1 671 56.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-198 696.4 682 56.7
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.5e-198 695.7 682 56.5
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.5e-198 695.7 682 56.5
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-193 680.2 680 56.5
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.9e-190 667.9 550 62.4
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 3.3e-188 662.5 679 55.2
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 9.6e-188 661.0 675 55.0
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 9.9e-185 651.0 577 59.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 8.4e-176 621.3 570 58.2
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 9.3e-175 617.8 424 72.2
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 4.6e-174 615.5 550 58.5
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 7.2e-167 591.7 589 54.3
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.2e-160 570.1 454 64.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 9.4e-159 564.7 528 60.4
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.7e-152 543.9 435 64.6
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 7.2e-151 538.5 556 51.8
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.5e-144 515.0 555 49.0
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.6e-129 467.6 337 66.5
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.8e-123 446.8 382 57.6
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.7e-123 446.4 385 56.9
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.9e-104 383.3 286 64.7
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-88 331.3 349 52.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.2e-81 308.5 544 36.9
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.6e-70 271.6 394 42.4
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 7.4e-63 246.1 546 31.7
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.2e-60 238.8 215 57.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.1e-42 179.1 140 60.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.7e-41 174.5 164 53.7
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 6.1e-33 146.7 294 31.6
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.2e-27 128.3 77 80.5
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 2.2e-22 111.7 101 57.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.1e-21 107.8 215 36.7
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 7.7e-20 103.2 99 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 7.2e-18 96.7 163 34.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.8e-14 84.7 60 63.3
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 5.9e-12 77.0 153 37.9
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 7.3e-10 70.1 57 66.7


User provided reference genes

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