Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.4e-49 199.1 92 100.0
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.2e-49 198.0 92 98.9
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 2.9e-42 174.9 90 87.8
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 3.8e-42 174.5 84 94.0
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 8.5e-42 173.3 92 85.9
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 8.5e-42 173.3 92 85.9
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 8.5e-42 173.3 92 82.6
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.9e-41 172.2 90 84.4
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 1.9e-41 172.2 83 92.8
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 1.9e-41 172.2 83 92.8
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 3.2e-41 171.4 93 83.9
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 5.5e-41 170.6 92 83.7
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 5.5e-41 170.6 97 81.4
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 7.2e-41 170.2 92 83.7
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 7.2e-41 170.2 92 83.7
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 1.2e-40 169.5 85 88.2
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.6e-40 169.1 87 85.1
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.6e-40 169.1 87 85.1
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 2.7e-40 168.3 92 81.5
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.6e-40 167.9 92 82.6
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 6.1e-40 167.2 84 89.3
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 7.9e-40 166.8 97 80.4
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 7.9e-40 166.8 90 81.1
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 1.0e-39 166.4 84 88.1
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.0e-39 166.4 92 81.5
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.0e-39 166.4 92 81.5
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.4e-39 166.0 92 84.8
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 1.4e-39 166.0 92 80.4
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.8e-39 165.6 92 81.5
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.8e-39 165.6 92 82.6
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 2.3e-39 165.2 92 81.5
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 3.0e-39 164.9 92 80.4
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 3.9e-39 164.5 84 85.7
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 3.9e-39 164.5 85 85.9
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 8.8e-39 163.3 92 78.3
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.1e-38 162.9 81 91.4
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 2.0e-38 162.2 90 75.6
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.6e-38 161.8 92 80.4
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 3.3e-38 161.4 90 80.0
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 3.3e-38 161.4 89 80.9
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 4.4e-38 161.0 85 83.5
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 4.4e-38 161.0 90 81.1
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 5.7e-38 160.6 96 77.1
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 7.4e-38 160.2 85 81.2
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 7.4e-38 160.2 92 76.1
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 9.7e-38 159.8 90 77.8
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 1.3e-37 159.5 89 79.8
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.3e-37 159.5 89 79.8
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.3e-37 159.5 89 79.8
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.3e-37 159.5 89 79.8
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.3e-37 159.5 92 76.1
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 1.3e-37 159.5 90 77.8
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.7e-37 159.1 92 77.2
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.7e-37 159.1 92 76.1
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 2.2e-37 158.7 92 76.1
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 2.8e-37 158.3 87 79.3
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 3.7e-37 157.9 88 77.3
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 4.8e-37 157.5 92 78.3
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 4.8e-37 157.5 84 79.8
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 6.3e-37 157.1 92 77.2
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 6.3e-37 157.1 86 81.4
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 6.3e-37 157.1 85 80.0
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 8.2e-37 156.8 92 75.0
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 1.1e-36 156.4 85 82.4
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 1.1e-36 156.4 84 79.8
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 1.8e-36 155.6 84 81.0
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 3.1e-36 154.8 92 75.0
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 3.1e-36 154.8 93 75.3
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 7.0e-36 153.7 92 73.9
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.2e-35 152.9 85 77.6
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 1.2e-35 152.9 90 75.6
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 1.2e-35 152.9 90 75.6
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 1.2e-35 152.9 90 75.6
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 1.2e-35 152.9 90 75.6
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 1.2e-35 152.9 90 75.6
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 1.6e-35 152.5 90 74.4
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 2.0e-35 152.1 94 73.4
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 2.6e-35 151.8 85 78.8
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 2.6e-35 151.8 92 73.9
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 92 73.9
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 90 74.4
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 92 73.9
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 2.6e-35 151.8 92 73.9
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 3.5e-35 151.4 91 71.4
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 4.5e-35 151.0 85 77.6
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 4.5e-35 151.0 85 78.8
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 4.5e-35 151.0 85 74.1
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 7.7e-35 150.2 84 76.2
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 7.7e-35 150.2 84 76.2
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 7.7e-35 150.2 85 76.5
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 7.7e-35 150.2 91 72.5
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 76.5
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 76.5
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 2.9e-34 148.3 91 69.2
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 3.8e-34 147.9 89 73.0
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 3.8e-34 147.9 89 73.0
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 5.0e-34 147.5 84 76.2
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 5.0e-34 147.5 80 80.0
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 1.9e-33 145.6 84 76.2
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 2.5e-33 145.2 83 75.9
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 1.6e-32 142.5 81 75.3
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 1.4e-31 139.4 83 74.7
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 2.3e-31 138.7 85 72.9
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 3.0e-31 138.3 83 75.9
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 6.7e-31 137.1 90 70.0
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 8.8e-31 136.7 80 72.5
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.5e-30 136.0 94 70.2
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 3.3e-30 134.8 83 73.5
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 4.4e-30 134.4 90 67.8
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 6.3e-29 130.6 70 78.6
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 6.3e-29 130.6 83 71.1
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 1.8e-28 129.0 69 79.7
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 3.1e-28 128.3 84 71.4
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 2.2e-26 122.1 84 65.5
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 2.9e-26 121.7 84 65.5
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.5e-26 120.6 84 65.5
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 4.0e-23 111.3 57 80.7
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.3e-21 106.3 70 70.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.3e-21 106.3 70 70.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 6.3e-21 104.0 82 54.9
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 8.3e-21 103.6 88 50.0
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 1.3e-18 96.3 78 55.1
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 1.2e-14 83.2 85 42.4
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 1.7e-13 79.3 42 73.8
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 2.2e-13 79.0 78 43.6
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 5.9e-11 70.9 37 89.2
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 8.6e-10 67.0 87 48.3
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 4.0e-07 58.2 36 77.8
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 6.8e-07 57.4 36 75.0
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 5.7e-06 54.3 56 44.6


User provided reference genes

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