Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.6e-80 302.0 150 100.0
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.9e-25 117.9 55 94.5
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.9e-25 117.9 55 94.5
Nitab4.5_0005347g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.2e-22 109.0 83 72.3
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 5.5e-22 108.2 55 87.3
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 1.3e-20 103.6 55 81.8
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.3e-20 103.6 55 81.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.8e-20 103.2 52 82.7
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.0e-20 102.4 83 67.5
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.0e-20 102.4 55 80.0
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.1e-19 100.5 83 66.3
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.1e-19 100.5 83 66.3
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.7e-19 98.2 83 66.3
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.3e-18 97.1 79 68.4
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 6.9e-17 91.3 83 61.4
Nitab4.5_0003165g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 9.0e-17 90.9 83 61.4
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.5e-16 90.1 74 56.8
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 2.0e-16 89.7 52 73.1
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 2.0e-16 89.7 52 73.1
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.0e-16 89.7 52 71.2
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 2.0e-16 89.7 60 66.7
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 2.6e-16 89.4 52 71.2
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 3.4e-16 89.0 52 71.2
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 3.4e-16 89.0 52 71.2
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.5e-16 88.6 52 71.2
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 7.6e-16 87.8 52 71.2
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 7.6e-16 87.8 52 71.2
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 7.6e-16 87.8 60 61.7
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.0e-15 87.4 52 69.2
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.0e-15 87.4 52 69.2
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.3e-15 87.0 52 67.3
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.7e-15 86.7 60 63.3
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.2e-15 86.3 60 63.3
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.2e-15 86.3 60 61.7
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.9e-15 85.9 60 60.0
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.9e-15 85.9 60 60.0
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 2.9e-15 85.9 52 67.3
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.8e-15 85.5 55 67.3
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 3.8e-15 85.5 60 65.0
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 5.0e-15 85.1 60 61.7
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 5.0e-15 85.1 60 61.7
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 5.0e-15 85.1 60 60.0
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 6.5e-15 84.7 60 60.0
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 6.5e-15 84.7 60 60.0
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 6.5e-15 84.7 60 56.7
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.5e-15 84.7 52 67.3
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.1e-14 84.0 52 67.3
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.1e-14 84.0 52 67.3
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.1e-14 84.0 60 58.3
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.1e-14 84.0 60 58.3
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.1e-14 84.0 78 52.6
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 1.4e-14 83.6 52 63.5
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.4e-14 83.6 60 60.0
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 1.4e-14 83.6 60 58.3
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-14 83.6 60 58.3
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-14 83.6 60 58.3
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.4e-14 83.6 60 56.7
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 1.9e-14 83.2 52 65.4
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.9e-14 83.2 74 54.1
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.9e-14 83.2 60 58.3
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.9e-14 83.2 57 59.6
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 2.5e-14 82.8 52 67.3
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.5e-14 82.8 52 67.3
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 2.5e-14 82.8 60 63.3
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.5e-14 82.8 60 58.3
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 3.2e-14 82.4 74 51.4
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 3.2e-14 82.4 60 60.0
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 4.2e-14 82.0 60 58.3
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 4.2e-14 82.0 60 58.3
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 4.2e-14 82.0 52 63.5
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 4.2e-14 82.0 51 66.7
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 4.2e-14 82.0 52 61.5
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.2e-14 82.0 52 65.4
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 4.2e-14 82.0 60 58.3
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 5.5e-14 81.6 52 65.4
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 5.5e-14 81.6 52 59.6
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.5e-14 81.6 60 58.3
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 7.2e-14 81.3 52 67.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 7.2e-14 81.3 52 61.5
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 7.2e-14 81.3 60 55.0
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 9.3e-14 80.9 60 53.3
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 9.3e-14 80.9 52 65.4
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 9.3e-14 80.9 60 53.3
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 9.3e-14 80.9 60 60.0
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 1.2e-13 80.5 60 56.7
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.6e-13 80.1 60 53.3
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.6e-13 80.1 55 54.5
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.6e-13 80.1 60 60.0
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.6e-13 80.1 60 60.0
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 2.1e-13 79.7 60 58.3
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.1e-13 79.7 60 53.3
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 2.7e-13 79.3 60 53.3
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 3.6e-13 79.0 55 61.8
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 7.9e-13 77.8 52 63.5
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 7.9e-13 77.8 52 63.5
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 7.9e-13 77.8 52 63.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 7.9e-13 77.8 52 63.5
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 7.9e-13 77.8 52 63.5
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 7.9e-13 77.8 52 63.5
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 7.9e-13 77.8 52 55.8
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 7.9e-13 77.8 49 71.4
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.0e-12 77.4 52 55.8
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.4e-12 77.0 52 57.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.4e-12 77.0 52 55.8
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.4e-12 77.0 80 46.2
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.8e-12 76.6 52 57.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 1.8e-12 76.6 52 57.7
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.8e-12 76.6 60 51.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.8e-12 76.6 52 57.7
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.3e-12 76.3 52 53.8
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 2.3e-12 76.3 52 53.8
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.3e-12 76.3 53 52.8
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 3.0e-12 75.9 51 56.9
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 6.7e-12 74.7 54 53.7
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 6.7e-12 74.7 54 53.7
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 8.8e-12 74.3 61 50.8
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.1e-11 73.9 52 55.8
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.5e-11 73.6 52 53.8
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.3e-10 70.5 56 51.8
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 4.8e-10 68.6 87 39.1
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 2.4e-09 66.2 71 47.9
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 5.3e-09 65.1 60 50.0
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.2e-08 63.9 88 37.5
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 2.6e-08 62.8 51 49.0
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 4.5e-08 62.0 81 39.5
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.3e-07 60.5 51 47.1
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.2e-07 59.7 43 62.8
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 8.5e-07 57.8 47 51.1
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 4.2e-06 55.5 52 44.2
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 4.2e-06 55.5 92 32.6
CAN.G5797.1 Capsicum annuum HOM05D009059 ORTHO05D011207 5.5e-06 55.1 59 49.2
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 9.4e-06 54.3 76 42.1
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 9.4e-06 54.3 76 40.8


User provided reference genes

Program Settings