Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 8.4e-25 116.3 63 100.0
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 1.9e-13 78.6 68 72.1
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 4.3e-13 77.4 69 71.0
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 4.3e-13 77.4 69 71.0
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 5.7e-13 77.0 67 73.1
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 1.3e-12 75.9 69 69.6
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 2.2e-12 75.1 64 68.8
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.1e-11 72.8 67 64.2
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 6.9e-11 70.1 68 63.2
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 9.1e-11 69.7 72 62.5
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 9.1e-11 69.7 68 58.8
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 2.0e-10 68.6 69 60.9
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 2.0e-10 68.6 68 57.4
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 1.0e-09 66.2 70 60.0
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 1.3e-09 65.9 59 69.5
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 1.7e-09 65.5 63 63.5
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 2.2e-09 65.1 74 55.4
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 6.5e-09 63.5 54 70.4
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 6.5e-09 63.5 58 62.1
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 8.5e-09 63.2 63 63.5
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 8.5e-09 63.2 72 59.7
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 8.5e-09 63.2 72 59.7
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 8.5e-09 63.2 72 59.7
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.1e-08 62.8 63 61.9
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 1.9e-08 62.0 61 62.3
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 4.2e-08 60.8 62 61.3
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 5.5e-08 60.5 76 51.3
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 5.5e-08 60.5 67 58.2
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 7.2e-08 60.1 62 62.9
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 1.6e-07 58.9 71 52.1
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 2.1e-07 58.5 60 68.3
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 2.1e-07 58.5 62 61.3
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 2.1e-07 58.5 64 59.4
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.1e-07 58.5 43 74.4
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 2.1e-07 58.5 62 61.3
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 2.7e-07 58.2 69 55.1
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 3.6e-07 57.8 65 56.9
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 3.6e-07 57.8 75 48.0
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 4.6e-07 57.4 75 50.7
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 4.6e-07 57.4 74 50.0
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 6.1e-07 57.0 63 58.7
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 6.1e-07 57.0 57 63.2
Thhalv10015187m.g Eutrema salsugineum HOM05D013032 ORTHO05D009821 7.9e-07 56.6 75 49.3
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 7.9e-07 56.6 63 58.7
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 7.9e-07 56.6 45 68.9
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.0e-06 56.2 65 58.5
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.0e-06 56.2 65 58.5
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 1.0e-06 56.2 61 57.4
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 2.3e-06 55.1 63 54.0
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 3.0e-06 54.7 75 49.3
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 3.0e-06 54.7 75 46.7
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 3.0e-06 54.7 47 61.7
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 3.0e-06 54.7 38 76.3
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 3.9e-06 54.3 63 57.1
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 5.1e-06 53.9 50 58.0
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 5.1e-06 53.9 54 59.3
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 5.1e-06 53.9 64 54.7
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 5.1e-06 53.9 65 61.5
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 5.1e-06 53.9 47 68.1
BcaC04g20800 Brassica carinata HOM05D013032 ORTHO05D009821 8.8e-06 53.1 75 45.3
A10p08350 Brassica napus HOM05D013032 ORTHO05D009821 8.8e-06 53.1 75 45.3
BolC9t56782H Brassica oleracea HOM05D013032 ORTHO05D009821 8.8e-06 53.1 75 45.3
BraSC37t46169Z Brassica rapa HOM05D013032 ORTHO05D009821 8.8e-06 53.1 75 45.3
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 8.8e-06 53.1 73 47.9


User provided reference genes

Program Settings