Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005277g0110 Nicotiana tabacum HOM05D000404 ORTHO05D283810 2.0e-18 94.7 47 100.0
Dinv43811 Davidia involucrata HOM05D000404 ORTHO05D002003 5.7e-10 66.6 46 65.2
MD07G1137800 Malus domestica HOM05D000404 ORTHO05D002003 7.5e-10 66.2 39 76.9
Nitab4.5_0000885g0040 Nicotiana tabacum HOM05D000404 ORTHO05D002003 7.5e-10 66.2 46 73.9
Dinv32476 Davidia involucrata HOM05D000404 ORTHO05D002003 9.8e-10 65.9 46 63.0
DCAR_025191 Daucus carota HOM05D000404 ORTHO05D002003 1.3e-09 65.5 45 68.9
HanXRQChr04g0121061 Helianthus annuus HOM05D000404 ORTHO05D002003 1.3e-09 65.5 45 64.4
Actinidia20910 Actinidia chinensis HOM05D000404 ORTHO05D002003 2.2e-09 64.7 42 69.0
FAN01G2357 Fragaria x ananassa HOM05D000404 ORTHO05D002003 2.2e-09 64.7 40 72.5
FAN06G1341 Fragaria x ananassa HOM05D000404 ORTHO05D002003 2.2e-09 64.7 40 72.5
FAN06G3654 Fragaria x ananassa HOM05D000404 ORTHO05D002003 2.2e-09 64.7 40 72.5
RcHm_v2.0_Chr1g0355161 Rosa chinensis HOM05D000404 ORTHO05D002003 2.2e-09 64.7 40 72.5
FvH4_7g14210 Fragaria vesca HOM05D000404 ORTHO05D002003 2.8e-09 64.3 46 60.9
FvH4_7g14220 Fragaria vesca HOM05D000404 ORTHO05D002003 2.8e-09 64.3 39 74.4
FAN10G1888 Fragaria x ananassa HOM05D000404 ORTHO05D002003 2.8e-09 64.3 43 67.4
Nitab4.5_0014539g0010 Nicotiana tabacum HOM05D000404 ORTHO05D002003 2.8e-09 64.3 39 79.5
QL08p048891 Quercus lobata HOM05D000404 ORTHO05D002003 2.8e-09 64.3 40 72.5
QL08p048907 Quercus lobata HOM05D000404 ORTHO05D002003 2.8e-09 64.3 43 65.1
RcHm_v2.0_Chr1g0355141 Rosa chinensis HOM05D000404 ORTHO05D002003 2.8e-09 64.3 46 60.9
Aqoxy7G00318 Aquilegia oxysepala HOM05D000404 ORTHO05D002003 3.7e-09 63.9 43 65.1
ECA236G2294 Erigeron canadensis HOM05D000404 ORTHO05D002003 3.7e-09 63.9 45 64.4
MD01G1059800 Malus domestica HOM05D000404 ORTHO05D002003 3.7e-09 63.9 39 74.4
CSS0027404 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D002003 4.8e-09 63.5 42 66.7
Lsat_1_v5_gn_7_4541 Lactuca sativa HOM05D000404 ORTHO05D002003 4.8e-09 63.5 46 63.0
TAR629G1465 Trochodendron aralioides HOM05D000404 ORTHO05D002003 6.3e-09 63.2 43 67.4
Cfa003931 Carpinus fangiana HOM05D000404 ORTHO05D002003 8.3e-09 62.8 40 70.0
Hund16925 Selenicereus undatus HOM05D000404 ORTHO05D002003 8.3e-09 62.8 39 71.8
FAN03G1541 Fragaria x ananassa HOM05D000404 ORTHO05D002003 1.1e-08 62.4 46 58.7
FAN03G3182 Fragaria x ananassa HOM05D000404 ORTHO05D002003 1.1e-08 62.4 40 70.0
FAN10G0203 Fragaria x ananassa HOM05D000404 ORTHO05D002003 1.1e-08 62.4 46 58.7
Prupe.2G169900 Prunus persica HOM05D000404 ORTHO05D002003 1.1e-08 62.4 40 67.5
GSVIVG01026920001 Vitis vinifera HOM05D000404 ORTHO05D002003 1.1e-08 62.4 43 62.8
Eucgr.E00138 Eucalyptus grandis HOM05D000404 ORTHO05D002003 1.4e-08 62.0 42 71.4
PGR042G3912 Punica granatum HOM05D000404 ORTHO05D002003 1.4e-08 62.0 39 74.4
Nn1g01524 Nelumbo nucifera HOM05D000404 ORTHO05D002003 1.8e-08 61.6 43 62.8
Nitab4.5_0004811g0010 Nicotiana tabacum HOM05D000404 ORTHO05D002003 1.8e-08 61.6 48 68.8
Prupe.2G170000 Prunus persica HOM05D000404 ORTHO05D002003 1.8e-08 61.6 39 71.8
Cpa.g.sc18.253 Carica papaya HOM05D000404 ORTHO05D002003 2.4e-08 61.2 38 71.1
Duzib138G0619 Durio zibethinus HOM05D000404 ORTHO05D002003 2.4e-08 61.2 37 73.0
FAN06G1183 Fragaria x ananassa HOM05D000404 ORTHO05D002003 2.4e-08 61.2 43 62.8
FAN06G4023 Fragaria x ananassa HOM05D000404 ORTHO05D002003 2.4e-08 61.2 43 62.8
TWI14G0690 Tripterygium wilfordii HOM05D000404 ORTHO05D002003 2.4e-08 61.2 39 71.8
GSVIVG01026922001 Vitis vinifera HOM05D000404 ORTHO05D002003 2.4e-08 61.2 39 71.8
COL.COLO4_12709 Corchorus olitorius HOM05D000404 ORTHO05D002003 3.1e-08 60.8 45 62.2
Lj7C513G4 Lonicera japonica HOM05D000404 ORTHO05D002003 3.1e-08 60.8 38 71.1
Actinidia20911 Actinidia chinensis HOM05D000404 ORTHO05D002003 4.1e-08 60.5 46 58.7
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 4.1e-08 60.5 43 65.1
Phvul.008G065600 Phaseolus vulgaris HOM05D000404 ORTHO05D002003 4.1e-08 60.5 43 62.8
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 5.4e-08 60.1 43 62.8
CANSAT56G3549 Cannabis sativa HOM05D000404 ORTHO05D002003 5.4e-08 60.1 40 67.5
Psat3g108680 Pisum sativum HOM05D000404 ORTHO05D002003 5.4e-08 60.1 43 62.8
Rhsim07G0015700 Rhododendron simsii HOM05D000404 ORTHO05D002003 5.4e-08 60.1 38 68.4
TPR.G37721 Trifolium pratense HOM05D000404 ORTHO05D002003 5.4e-08 60.1 43 62.8
VMungo1383G0478 Vigna mungo HOM05D000404 ORTHO05D002003 5.4e-08 60.1 43 62.8
CiPaw.01G060800 Carya illinoinensis HOM05D000404 ORTHO05D002003 7.0e-08 59.7 39 69.2
Ciclev10019525m.g Citrus clementina HOM05D000404 ORTHO05D002003 7.0e-08 59.7 40 67.5
Migut.B01748 Erythranthe guttata HOM05D000404 ORTHO05D002003 7.0e-08 59.7 41 65.9
FAN01G2962 Fragaria x ananassa HOM05D000404 ORTHO05D002003 7.0e-08 59.7 43 60.5
Manes.05G034800 Manihot esculenta HOM05D000404 ORTHO05D002003 7.0e-08 59.7 39 66.7
Nn6g33434 Nelumbo nucifera HOM05D000404 ORTHO05D002003 7.0e-08 59.7 43 62.8
Sp6g00530 Schrenkiella parvula HOM05D000404 ORTHO05D002003 7.0e-08 59.7 40 67.5
Cc02_g37950 Coffea canephora HOM05D000404 ORTHO05D002003 9.1e-08 59.3 44 61.4
Cc02_g37960 Coffea canephora HOM05D000404 ORTHO05D002003 9.1e-08 59.3 40 65.0
Duzib138G0742 Durio zibethinus HOM05D000404 ORTHO05D002003 9.1e-08 59.3 43 60.5
Thecc.01G359600 Theobroma cacao HOM05D000404 ORTHO05D002003 9.1e-08 59.3 39 69.2
vmacro13284 Vaccinium macrocarpon HOM05D000404 ORTHO05D002003 9.1e-08 59.3 36 75.0
Gohir.A03G015100 Gossypium hirsutum HOM05D000404 ORTHO05D002003 1.2e-07 58.9 43 60.5
Gohir.D11G092800 Gossypium hirsutum HOM05D000404 ORTHO05D002003 1.2e-07 58.9 43 60.5
ATR0680G407 Amborella trichopoda HOM05D000404 ORTHO05D002003 1.6e-07 58.5 39 66.7
CDE02G2901 Ceratophyllum demersum HOM05D000404 ORTHO05D002003 1.6e-07 58.5 39 69.2
CDE06G0594 Ceratophyllum demersum HOM05D000404 ORTHO05D002003 1.6e-07 58.5 39 69.2
Haze_15497 Corylus avellana HOM05D000404 ORTHO05D002003 1.6e-07 58.5 38 68.4
MD07G1138200 Malus domestica HOM05D000404 ORTHO05D002003 1.6e-07 58.5 43 60.5
Oeu055007.1 Olea europaea HOM05D000404 ORTHO05D002003 1.6e-07 58.5 41 65.9
PGR042G1966 Punica granatum HOM05D000404 ORTHO05D002003 1.6e-07 58.5 38 65.8
vmacro13283 Vaccinium macrocarpon HOM05D000404 ORTHO05D002003 1.6e-07 58.5 38 65.8
EL10Ac1g00422 Beta vulgaris HOM05D000404 ORTHO05D002003 2.0e-07 58.2 41 63.4
ECA236G3665 Erigeron canadensis HOM05D000404 ORTHO05D002003 2.0e-07 58.2 41 65.9
Migut.N01443 Erythranthe guttata HOM05D000404 ORTHO05D002003 2.0e-07 58.2 43 65.1
MD01G1059300 Malus domestica HOM05D000404 ORTHO05D002003 2.0e-07 58.2 43 60.5
AUR62011658 Chenopodium quinoa HOM05D000404 ORTHO05D002003 2.7e-07 57.8 41 61.0
HanXRQChr04g0121071 Helianthus annuus HOM05D000404 ORTHO05D002003 2.7e-07 57.8 39 69.2
Medtr7g077410 Medicago truncatula HOM05D000404 ORTHO05D002003 2.7e-07 57.8 43 60.5
Potri.014G083800 Populus trichocarpa HOM05D000404 ORTHO05D002003 2.7e-07 57.8 40 62.5
Sabra14G0060800 Salix brachista HOM05D000404 ORTHO05D002003 2.7e-07 57.8 40 62.5
Gohir.A08G131200 Gossypium hirsutum HOM05D000404 ORTHO05D002003 3.5e-07 57.4 43 60.5
Ah.15g098070 Amaranthus hybridus HOM05D000404 ORTHO05D002003 4.5e-07 57.0 41 63.4
Glyma.18G232400 Glycine max HOM05D000404 ORTHO05D002003 4.5e-07 57.0 43 60.5
Hund27279 Selenicereus undatus HOM05D000404 ORTHO05D002003 4.5e-07 57.0 42 61.9
Actinidia10015 Actinidia chinensis HOM05D000404 ORTHO05D002003 5.9e-07 56.6 46 56.5
BcaB01g02255 Brassica carinata HOM05D000404 ORTHO05D002003 5.9e-07 56.6 40 65.0
BcaC04g24166 Brassica carinata HOM05D000404 ORTHO05D002003 5.9e-07 56.6 40 65.0
A09p00440 Brassica napus HOM05D000404 ORTHO05D002003 5.9e-07 56.6 40 65.0
C09p00420 Brassica napus HOM05D000404 ORTHO05D002003 5.9e-07 56.6 40 65.0
BolC9t52978H Brassica oleracea HOM05D000404 ORTHO05D002003 5.9e-07 56.6 40 65.0
BraA09t35716Z Brassica rapa HOM05D000404 ORTHO05D002003 5.9e-07 56.6 40 65.0
Gorai.004G158600 Gossypium raimondii HOM05D000404 ORTHO05D002003 5.9e-07 56.6 42 61.9
Gorai.007G099100 Gossypium raimondii HOM05D000404 ORTHO05D002003 5.9e-07 56.6 38 63.2
Peaxi162Scf00020g00248 Petunia axillaris HOM05D000404 ORTHO05D002003 5.9e-07 56.6 43 58.1
AUR62016481 Chenopodium quinoa HOM05D000404 ORTHO05D002003 7.7e-07 56.2 41 58.5
Gohir.A11G088600 Gossypium hirsutum HOM05D000404 ORTHO05D002003 7.7e-07 56.2 41 61.0
Gohir.D11G092900 Gossypium hirsutum HOM05D000404 ORTHO05D002003 7.7e-07 56.2 41 61.0
Gorai.007G099200 Gossypium raimondii HOM05D000404 ORTHO05D002003 7.7e-07 56.2 41 61.0
Hma1.2p1_0033F.1_g020170 Hydrangea macrophylla HOM05D000404 ORTHO05D002003 7.7e-07 56.2 45 55.6
Ah.07g196350 Amaranthus hybridus HOM05D000404 ORTHO05D002003 1.0e-06 55.8 37 67.6
AL6G52980 Arabidopsis lyrata HOM05D000404 ORTHO05D002003 1.0e-06 55.8 40 62.5
AUR62004350 Chenopodium quinoa HOM05D000404 ORTHO05D002003 1.0e-06 55.8 42 61.9
Thhalv10028560m.g Eutrema salsugineum HOM05D000404 ORTHO05D002003 1.0e-06 55.8 40 60.0
Solyc01g094580.3 Solanum lycopersicum HOM05D000404 ORTHO05D002003 1.0e-06 55.8 43 58.1
Sopen01g038390 Solanum pennellii HOM05D000404 ORTHO05D002003 1.0e-06 55.8 43 58.1
PGSC0003DMG400000169 Solanum tuberosum HOM05D000404 ORTHO05D002003 1.0e-06 55.8 43 58.1
SGA_v2.0_scaffold4G02328 Striga asiatica HOM05D000404 ORTHO05D002003 1.0e-06 55.8 39 66.7
Glyma.09G260100 Glycine max HOM05D000404 ORTHO05D002003 1.3e-06 55.5 43 60.5
Lj1g0009008 Lotus japonicus HOM05D000404 ORTHO05D002003 1.3e-06 55.5 43 58.1
Rhsim12G0035900 Rhododendron simsii HOM05D000404 ORTHO05D002003 1.3e-06 55.5 42 61.9
Sabra14G0060700 Salix brachista HOM05D000404 ORTHO05D002003 1.3e-06 55.5 43 58.1
TWI59G0856 Tripterygium wilfordii HOM05D000404 ORTHO05D002003 1.3e-06 55.5 45 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1791 Anthoceros agrestis HOM05D000404 ORTHO05D002003 1.7e-06 55.1 38 65.8
Carub.0006s3677 Capsella rubella HOM05D000404 ORTHO05D002003 1.7e-06 55.1 40 60.0
CAN.G78.67 Capsicum annuum HOM05D000404 ORTHO05D002003 1.7e-06 55.1 42 59.5
CARHR248610 Cardamine hirsuta HOM05D000404 ORTHO05D002003 1.7e-06 55.1 40 60.0
MBI18_g21558_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D002003 1.7e-06 55.1 38 65.8
Oeu037302.1 Olea europaea HOM05D000404 ORTHO05D002003 1.7e-06 55.1 43 55.8
AT4G00490 Arabidopsis thaliana HOM05D000404 ORTHO05D002003 2.2e-06 54.7 40 60.0
CANSAT56G1555 Cannabis sativa HOM05D000404 ORTHO05D002003 2.2e-06 54.7 39 59.0
Cpa.g.sc18.252 Carica papaya HOM05D000404 ORTHO05D002003 2.2e-06 54.7 42 54.8
Haze_08776 Corylus avellana HOM05D000404 ORTHO05D002003 2.2e-06 54.7 43 60.5
Haze_15496 Corylus avellana HOM05D000404 ORTHO05D002003 2.2e-06 54.7 43 60.5
Nitab4.5_0005277g0100 Nicotiana tabacum HOM05D000404 ORTHO05D002003 2.2e-06 54.7 43 55.8
SEGI_22808 Sequoiadendron giganteum HOM05D000404 ORTHO05D002003 2.2e-06 54.7 42 61.9
MSTRG.28223 Avicennia marina HOM05D000404 ORTHO05D002003 2.9e-06 54.3 38 60.5
CSS0020242 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D002003 3.8e-06 53.9 43 55.8
Carub.0004s2858 Capsella rubella HOM05D000404 ORTHO05D002003 3.8e-06 53.9 45 51.1
Cfa003932 Carpinus fangiana HOM05D000404 ORTHO05D002003 3.8e-06 53.9 43 58.1
Lsat_1_v5_gn_7_4601 Lactuca sativa HOM05D000404 ORTHO05D002003 3.8e-06 53.9 37 67.6
Lalb_Chr01g0011511 Lupinus albus HOM05D000404 ORTHO05D002003 3.8e-06 53.9 40 60.0
Lalb_Chr24g0401651 Lupinus albus HOM05D000404 ORTHO05D002003 3.8e-06 53.9 40 60.0
SalBow3G2250 Salvia bowleyana HOM05D000404 ORTHO05D002003 3.8e-06 53.9 40 60.0
SEGI_33016 Sequoiadendron giganteum HOM05D000404 ORTHO05D002003 5.0e-06 53.5 39 66.7
AUR62022556 Chenopodium quinoa HOM05D000404 ORTHO05D002003 8.5e-06 52.8 42 59.5
Ca_07911_v3 Cicer arietinum L. HOM05D000404 ORTHO05D002003 8.5e-06 52.8 43 55.8
Eucgr.E00139 Eucalyptus grandis HOM05D000404 ORTHO05D002003 8.5e-06 52.8 40 57.5
Os09g0569200 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D002003 8.5e-06 52.8 43 55.8
Hund27280 Selenicereus undatus HOM05D000404 ORTHO05D002003 8.5e-06 52.8 42 57.1
TWI14G0086 Tripterygium wilfordii HOM05D000404 ORTHO05D002003 8.5e-06 52.8 45 55.6


User provided reference genes

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