Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.3e-70 270.8 196 100.0
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.9e-63 247.3 196 88.8
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 3.3e-62 244.2 196 86.2
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 1.6e-61 241.9 196 87.8
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 2.1e-61 241.5 196 75.0
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.5e-56 224.2 196 81.1
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.3e-54 217.6 196 80.1
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 1.2e-53 215.7 194 78.4
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.7e-48 198.0 196 77.6
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 1.1e-38 166.0 191 62.8
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 3.6e-37 161.0 190 67.9
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 2.4e-36 158.3 188 65.4
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 3.1e-36 157.9 190 68.4
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 5.3e-36 157.1 190 61.1
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.5e-35 155.6 190 42.6
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 5.8e-35 153.7 190 41.1
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 2.2e-34 151.8 189 65.6
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 2.9e-34 151.4 192 65.6
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 7.1e-33 146.7 191 40.8
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 6.0e-32 143.7 183 40.4
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.9e-32 143.3 183 40.4
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.9e-32 143.3 184 37.5
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.3e-31 142.5 191 61.8
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.7e-31 142.1 191 63.9
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.3e-31 141.7 184 38.0
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.1e-31 140.6 191 53.9
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 8.7e-31 139.8 187 64.7
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 2.5e-30 138.3 184 37.0
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.5e-30 138.3 184 37.0
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 1.6e-29 135.6 184 35.9
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 4.8e-29 134.0 191 55.5
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 6.2e-29 133.7 197 58.4
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 3.1e-28 131.3 179 62.6
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 4.0e-28 131.0 182 37.9
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.0e-28 131.0 189 37.0
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.0e-28 129.8 190 57.4
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.2e-27 129.4 183 55.7
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 2.0e-27 128.6 190 61.6
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 2.0e-27 128.6 186 58.6
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 2.6e-27 128.3 185 57.3
SalBow3G1735 Salvia bowleyana HOM05D003210 ORTHO05D000001 2.6e-27 128.3 186 63.4
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.4e-27 127.9 183 37.7
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.3e-26 125.9 189 60.3
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 1.3e-26 125.9 180 44.4
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 2.9e-26 124.8 183 50.8
Nitab4.5_0002165g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.8e-26 124.4 64 90.6
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 6.4e-26 123.6 183 34.4
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.4e-26 123.6 183 34.4
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 1.1e-25 122.9 186 35.5
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.9e-25 122.1 189 33.9
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 2.4e-25 121.7 160 51.9
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 3.2e-25 121.3 183 36.1
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.1e-22 112.8 183 56.3
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.9e-22 112.1 183 57.4
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.1e-21 108.6 175 54.9
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 2.1e-21 108.6 187 31.0
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 2.8e-21 108.2 179 59.8
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 6.2e-21 107.1 72 65.3
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 8.1e-21 106.7 174 34.5
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.1e-20 106.3 148 66.9
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.8e-20 105.5 187 30.5
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 3.1e-20 104.8 160 60.6
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.3e-20 104.0 187 29.9
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.3e-18 99.4 148 35.1
Glyma.01G021450 Glycine max HOM05D003210 ORTHO05D000001 2.9e-18 98.2 154 57.8
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 4.9e-18 97.4 174 48.9
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 4.9e-18 97.4 189 49.7
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 6.5e-18 97.1 174 48.3
PGSC0003DMG400012917 Solanum tuberosum HOM05D003210 ORTHO05D000001 9.3e-17 93.2 66 69.7
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 2.1e-16 92.0 174 28.7
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 2.1e-16 92.0 174 28.7
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 2.1e-16 92.0 174 28.7
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.3e-15 88.6 87 44.8
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 5.1e-15 87.4 178 53.4
Oeu040066.1 Olea europaea HOM05D003210 ORTHO05D000001 1.1e-14 86.3 177 49.2
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 1.3e-13 82.8 190 45.8
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 1.6e-13 82.4 178 28.7
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 1.4e-12 79.3 181 39.2
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 3.1e-12 78.2 179 52.0
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 5.3e-12 77.4 131 52.7
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 6.9e-12 77.0 182 48.9
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 1.5e-11 75.9 70 55.7
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 1.5e-11 75.9 69 55.1
Oeu017112.4 Olea europaea HOM05D000167 ORTHO05D000465 2.0e-11 75.5 71 53.5
Zm00001eb037970 Zea mays HOM05D003210 ORTHO05D000001 2.6e-11 75.1 77 46.8
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 5.9e-11 73.9 174 25.9
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 7.6e-11 73.6 71 54.9
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 2.2e-10 72.0 178 24.7
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.9e-10 71.6 68 55.9
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.8e-10 71.2 69 58.0
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 1.1e-09 69.7 68 52.9
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.4e-09 69.3 69 52.2
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.4e-09 69.3 70 48.6
Dinv34734 Davidia involucrata HOM05D003210 ORTHO05D000001 3.2e-09 68.2 49 51.0
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.2e-09 68.2 68 55.9
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 3.2e-09 68.2 73 47.9
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 7.2e-09 67.0 190 47.9
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 7.2e-09 67.0 70 51.4
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 9.3e-09 66.6 69 49.3
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.6e-08 65.9 70 50.0
Rhsim05G0168300 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.7e-08 65.1 74 50.0
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 3.6e-08 64.7 81 38.3
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 4.6e-08 64.3 70 47.1
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 6.1e-08 63.9 70 45.7
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 7.9e-08 63.5 70 45.7
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 7.9e-08 63.5 170 32.4
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 1.0e-07 63.2 44 56.8
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 1.3e-07 62.8 166 25.9
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.3e-07 62.8 166 25.9
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.3e-07 62.8 70 50.0
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 1.8e-07 62.4 68 47.1
THA.LOC104798889 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.3e-07 62.0 184 44.6
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 3.0e-07 61.6 70 45.7
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 5.1e-07 60.8 70 44.3
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 6.7e-07 60.5 178 37.6
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 6.7e-07 60.5 69 47.8
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 8.7e-07 60.1 44 54.5
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 8.7e-07 60.1 66 43.9
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 1.1e-06 59.7 59 45.8
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 1.1e-06 59.7 59 45.8
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 1.1e-06 59.7 178 44.4
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 3.3e-06 58.2 54 44.4
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 5.7e-06 57.4 54 44.4
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 5.7e-06 57.4 71 45.1
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 7.4e-06 57.0 71 40.8
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 9.7e-06 56.6 58 44.8
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 9.7e-06 56.6 59 44.1
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.7e-06 56.6 59 44.1
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 9.7e-06 56.6 66 42.4


User provided reference genes

Program Settings