Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 3.8e-141 505.0 284 100.0
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 2.6e-134 482.3 287 86.1
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 4.1e-119 431.8 290 75.9
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 4.6e-94 348.6 287 62.0
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 1.8e-90 336.7 284 61.3
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 3.4e-89 332.4 283 62.2
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 2.4e-87 326.2 286 57.7
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 4.1e-87 325.5 283 60.8
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 5.4e-87 325.1 287 58.9
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 1.6e-86 323.6 287 58.2
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 1.0e-85 320.9 284 58.1
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 1.1e-84 317.4 285 58.9
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 7.3e-84 314.7 286 57.3
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 4.7e-83 312.0 285 64.6
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 4.7e-83 312.0 282 56.7
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 6.8e-82 308.1 280 57.1
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 6.8e-82 308.1 285 57.2
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 8.9e-82 307.8 292 56.8
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 8.9e-82 307.8 292 56.8
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 8.9e-82 307.8 285 57.5
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 1.5e-81 307.0 287 56.4
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 4.4e-81 305.4 282 57.1
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 4.4e-81 305.4 281 56.6
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 7.5e-81 304.7 284 57.7
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 1.3e-80 303.9 291 56.4
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 1.3e-80 303.9 279 56.6
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 1.3e-80 303.9 286 55.2
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 4.9e-80 302.0 281 52.3
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 2.4e-79 299.7 279 55.6
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 2.4e-79 299.7 280 57.5
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 3.2e-79 299.3 286 54.9
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 3.2e-79 299.3 282 56.7
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 9.2e-79 297.7 292 55.5
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 2.1e-78 296.6 280 65.4
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 2.7e-78 296.2 280 56.8
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 4.6e-78 295.4 279 63.4
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 6.0e-78 295.0 278 55.0
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 6.0e-78 295.0 278 55.0
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 7.8e-78 294.7 287 55.1
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 7.8e-78 294.7 288 60.4
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 7.8e-78 294.7 284 62.3
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 1.0e-77 294.3 281 66.2
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 1.7e-77 293.5 284 57.0
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 1.7e-77 293.5 281 55.2
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 5.1e-77 292.0 280 55.7
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 3.3e-76 289.3 283 52.3
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 4.3e-76 288.9 281 64.4
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 4.3e-76 288.9 287 55.4
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 2.1e-75 286.6 279 63.4
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.1e-75 286.6 279 63.4
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 6.2e-75 285.0 285 54.7
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 6.2e-75 285.0 285 60.4
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 1.1e-74 284.3 297 52.2
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 3.1e-74 282.7 285 60.0
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 4.0e-74 282.3 289 53.6
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 5.8e-73 278.5 280 52.1
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 1.3e-72 277.3 279 53.4
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.7e-72 276.9 289 59.2
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 2.4e-71 273.1 293 51.2
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 4.1e-71 272.3 281 52.0
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 9.2e-71 271.2 288 51.7
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 6.0e-70 268.5 284 58.1
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 3.0e-69 266.2 281 63.0
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 2.5e-68 263.1 255 55.3
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 5.6e-68 261.9 283 60.8
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 1.1e-66 257.7 248 56.9
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.6e-65 253.1 279 59.5
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 3.4e-65 252.7 263 52.9
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 5.8e-65 251.9 279 52.3
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 7.6e-65 251.5 263 53.6
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 1.9e-63 246.9 287 49.5
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 3.2e-63 246.1 237 56.1
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 2.1e-62 243.4 285 55.8
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 4.6e-62 242.3 172 71.5
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 6.0e-62 241.9 238 54.2
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 1.7e-61 240.4 235 53.6
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 1.6e-59 233.8 299 45.2
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.4e-58 230.7 277 46.9
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 1.5e-57 227.3 294 48.6
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 1.5e-57 227.3 125 85.6
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 2.6e-57 226.5 239 51.9
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 5.8e-57 225.3 283 43.1
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 1.3e-56 224.2 282 44.7
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 3.2e-55 219.5 242 51.7
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.4e-55 218.8 279 49.5
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.2e-54 217.6 279 54.5
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 3.6e-51 206.1 297 47.8
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.5e-49 200.7 253 45.8
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 3.5e-46 189.5 102 92.2
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.3e-43 181.0 234 45.7
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 2.6e-41 173.3 284 44.7
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 5.8e-41 172.2 121 72.7
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.7e-40 170.6 211 45.0
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 6.5e-40 168.7 165 60.0
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 7.1e-39 165.2 121 62.8
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 7.1e-39 165.2 232 52.6
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 3.5e-38 162.9 203 45.8
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 3.9e-37 159.5 290 34.8
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 5.1e-37 159.1 260 42.3
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 4.3e-36 156.0 201 45.8
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 7.4e-36 155.2 201 45.8
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 1.3e-35 154.5 200 45.0
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 1.6e-35 154.1 113 69.0
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 2.4e-34 150.2 167 50.3
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 4.1e-34 149.4 202 45.0
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 1.5e-33 147.5 167 49.1
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 1.5e-33 147.5 167 49.1
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 2.6e-33 146.7 167 49.7
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 2.6e-33 146.7 164 48.8
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.5e-31 140.2 212 54.7
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 7.2e-31 138.7 69 87.0
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 2.3e-29 133.7 221 35.3
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 3.9e-29 132.9 137 48.2
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 3.3e-28 129.8 164 51.8
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 6.5e-24 115.5 205 46.3
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 3.3e-20 103.2 206 36.9
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 1.9e-15 87.4 82 54.9
PGSC0003DMG400015096 Solanum tuberosum HOM05D006517 ORTHO05D007886 1.9e-15 87.4 54 75.9
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 1.1e-12 78.2 86 50.0
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 2.8e-11 73.6 50 68.0
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 8.5e-08 62.0 85 43.5
Cfa003465 Carpinus fangiana HOM05D000903 ORTHO05D000731 1.2e-06 58.2 86 37.2
Lj4g0011716 Lotus japonicus HOM05D000903 ORTHO05D000731 1.2e-06 58.2 65 43.1
Hund08906 Selenicereus undatus HOM05D000903 ORTHO05D000731 2.1e-06 57.4 110 33.6
A01p39440 Brassica napus HOM05D000903 ORTHO05D000731 4.7e-06 56.2 74 40.5
C01p50270 Brassica napus HOM05D000903 ORTHO05D000731 4.7e-06 56.2 74 40.5
BolC1t04885H Brassica oleracea HOM05D000903 ORTHO05D000731 4.7e-06 56.2 74 40.5
BolC1t04982H Brassica oleracea HOM05D000903 ORTHO05D000731 4.7e-06 56.2 74 40.5
BraA01t03984Z Brassica rapa HOM05D000903 ORTHO05D000731 4.7e-06 56.2 74 40.5
SEGI_19924 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 4.7e-06 56.2 58 53.4
SalBow6G0039 Salvia bowleyana HOM05D006517 ORTHO05D007886 6.1e-06 55.8 27 88.9
MD15G1224300 Malus domestica HOM05D000903 ORTHO05D000731 8.0e-06 55.5 113 33.6
Sc18g0002870 Simmondsia chinensis HOM05D000903 ORTHO05D000731 8.0e-06 55.5 81 37.0


User provided reference genes

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