Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 4.5e-236 820.8 411 100.0
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 7.2e-226 786.9 434 92.4
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 9.2e-205 716.8 434 85.3
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 9.2e-205 716.8 436 84.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.3e-203 713.0 436 84.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 6.6e-203 710.7 436 84.4
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 6.0e-196 687.6 407 87.2
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.6e-177 626.3 411 76.9
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 8.7e-171 604.0 400 75.5
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 2.5e-170 602.4 421 71.0
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 5.6e-170 601.3 432 70.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 9.6e-170 600.5 404 73.8
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.7e-169 598.6 419 72.8
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 8.1e-169 597.4 432 70.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.4e-168 595.9 420 71.0
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 5.3e-168 594.7 432 69.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 6.9e-168 594.3 404 73.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 6.9e-168 594.3 432 69.2
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.5e-167 593.2 404 72.8
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 2.6e-167 592.4 418 71.1
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.6e-167 592.4 404 73.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 5.8e-167 591.3 399 73.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 7.6e-167 590.9 422 69.9
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.2e-166 589.3 421 71.3
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 7.1e-165 584.3 399 72.4
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 7.9e-164 580.9 404 71.0
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.0e-163 580.5 410 71.7
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.3e-163 580.1 415 71.3
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 3.0e-163 578.9 432 67.8
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 3.9e-163 578.6 405 72.3
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.1e-163 578.2 423 70.2
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 6.7e-163 577.8 430 67.9
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.5e-162 576.6 417 70.0
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.5e-162 576.6 400 71.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-162 576.2 417 68.6
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.9e-162 576.2 389 73.8
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.7e-162 574.7 426 68.8
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 9.6e-162 573.9 421 68.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.3e-161 573.5 453 66.2
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.6e-161 573.2 411 69.3
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.6e-161 573.2 402 71.1
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.1e-161 572.8 389 72.8
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.8e-161 572.4 421 68.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.8e-161 572.4 400 70.5
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 4.8e-161 571.6 398 71.1
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 4.8e-161 571.6 432 66.7
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-160 570.5 431 67.3
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.4e-160 570.1 421 68.2
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.4e-160 569.3 403 71.0
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-160 569.3 396 72.2
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 5.3e-160 568.2 432 67.4
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 6.9e-160 567.8 432 66.4
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 9.0e-160 567.4 398 70.1
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.6e-159 565.8 430 67.0
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.6e-159 565.8 431 67.1
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.6e-159 565.8 425 67.5
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.5e-159 565.1 395 70.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.1e-157 560.5 388 71.4
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 9.3e-157 557.4 436 66.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.0e-155 553.9 420 66.7
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.3e-155 553.5 420 66.4
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.3e-155 553.5 415 68.2
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 3.9e-155 552.0 455 64.6
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 5.7e-154 548.1 389 69.2
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.2e-153 546.2 420 66.0
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 8.2e-153 544.3 413 66.1
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.4e-152 543.5 418 65.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.4e-152 543.5 418 65.3
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.4e-152 542.7 418 65.8
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 5.3e-152 541.6 398 67.1
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.5e-151 540.0 413 65.6
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.5e-151 540.0 398 67.3
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 3.4e-151 538.9 385 71.4
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.7e-150 536.6 423 65.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.6e-148 530.0 444 63.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 4.6e-148 528.5 348 74.4
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 3.0e-147 525.8 413 65.1
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 3.9e-147 525.4 413 65.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.5e-146 522.7 413 64.9
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.5e-146 522.7 413 64.9
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.3e-145 520.4 414 63.5
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.4e-144 516.9 390 66.2
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.1e-144 515.8 565 53.3
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.5e-143 511.9 343 74.1
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.3e-142 510.4 373 70.0
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.7e-142 510.0 391 65.7
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.0e-142 508.4 420 63.8
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.1e-141 507.3 431 61.5
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.2e-140 503.8 415 61.7
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-140 503.8 342 73.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.0e-139 499.2 399 60.9
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.1e-136 489.2 339 72.6
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.7e-134 483.4 393 63.4
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 5.0e-134 481.9 331 71.9
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.0e-131 472.6 343 69.4
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.7e-129 466.8 395 58.2
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.8e-128 463.4 384 64.6
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.1e-128 462.2 389 59.6
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 9.1e-128 461.1 378 60.3
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.6e-127 460.3 344 66.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 6.5e-126 454.9 380 59.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.6e-124 449.1 326 70.9
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.7e-121 440.3 338 64.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 5.9e-119 431.8 330 67.9
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 7.7e-119 431.4 334 66.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.1e-112 409.1 264 74.2
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 7.0e-112 408.3 292 72.3
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 7.7e-111 404.8 400 55.8
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 2.0e-103 380.2 319 60.5
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 5.6e-101 372.1 316 63.0
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.8e-99 367.1 371 50.1
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 9.2e-96 354.8 228 75.4
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.3e-94 350.9 262 66.0
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.1e-87 327.0 408 45.3
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 9.2e-80 301.6 413 41.4
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.3e-78 297.7 396 41.4
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 7.3e-69 265.4 261 53.3
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.3e-62 243.8 229 57.2
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.3e-57 228.0 165 67.3
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.1e-56 224.9 187 62.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.1e-47 194.1 168 54.8
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-45 188.3 167 56.9
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.7e-38 162.2 338 30.2
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.6e-36 157.9 127 63.0
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 4.8e-36 156.4 142 57.0
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.3e-30 137.5 120 59.2
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 4.3e-29 133.3 111 62.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.2e-28 131.0 93 74.2
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 9.1e-27 125.6 322 30.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.2e-24 115.9 95 63.2
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.1e-19 100.5 64 68.8
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.6e-13 80.9 81 50.6
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.3e-12 78.6 55 69.1
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.3e-12 78.6 62 61.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.2e-12 77.8 69 55.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 9.1e-11 72.4 43 81.4
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 2.5e-08 64.3 56 57.1
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 4.2e-08 63.5 78 47.4
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.1e-07 61.2 45 57.8


User provided reference genes

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