Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.7e-63 245.7 113 100.0
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-35 152.5 127 62.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 5.9e-29 131.0 123 57.7
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.9e-27 125.9 124 55.6
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 7.5e-24 114.0 116 46.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 3.7e-23 111.7 116 47.4
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 4.9e-23 111.3 128 43.8
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 4.9e-23 111.3 116 45.7
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 8.3e-23 110.5 116 47.4
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 8.3e-23 110.5 116 44.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.4e-22 109.8 116 45.7
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.4e-22 109.8 116 46.6
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.8e-22 109.4 126 45.2
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.8e-22 109.4 126 45.2
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.8e-22 109.4 111 45.0
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.8e-22 109.4 119 51.3
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.4e-22 109.0 113 45.1
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.2e-22 108.6 126 42.1
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.2e-22 108.6 116 45.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 3.2e-22 108.6 116 46.6
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 7.0e-22 107.5 115 45.2
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 7.0e-22 107.5 118 44.9
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.6e-21 106.3 126 45.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.0e-21 105.9 115 45.2
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.7e-21 105.5 116 45.7
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 2.7e-21 105.5 129 42.6
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.7e-21 105.5 116 43.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.5e-21 105.1 116 44.8
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 3.5e-21 105.1 126 45.2
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 4.6e-21 104.8 116 44.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 5.9e-21 104.4 122 41.8
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 5.9e-21 104.4 122 41.8
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 5.9e-21 104.4 117 44.4
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.0e-20 103.6 115 44.3
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.3e-20 103.2 116 42.2
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-20 103.2 116 45.7
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.3e-20 103.2 116 44.8
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.7e-20 102.8 118 41.5
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.7e-20 102.8 116 44.0
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.3e-20 102.4 126 40.5
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 2.3e-20 102.4 126 40.5
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.3e-20 102.4 116 44.8
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-20 102.4 115 46.1
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-20 102.4 115 46.1
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-20 102.4 115 46.1
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-20 102.4 116 42.2
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.0e-20 102.1 116 42.2
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.9e-20 101.7 118 44.1
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 3.9e-20 101.7 115 45.2
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 3.9e-20 101.7 116 44.8
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 5.0e-20 101.3 117 41.0
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 5.0e-20 101.3 119 42.9
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 5.0e-20 101.3 119 42.9
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 5.0e-20 101.3 118 42.4
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 6.6e-20 100.9 113 41.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 6.6e-20 100.9 117 41.0
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 6.6e-20 100.9 116 43.1
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 6.6e-20 100.9 116 43.1
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 6.6e-20 100.9 116 43.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 8.6e-20 100.5 117 41.0
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-19 100.1 117 41.0
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-19 100.1 121 44.6
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.1e-19 100.1 126 41.3
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.1e-19 100.1 119 43.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-19 99.8 116 43.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-19 99.8 116 43.1
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.9e-19 99.4 119 41.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.9e-19 99.4 117 44.4
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.5e-19 99.0 119 42.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.5e-19 99.0 116 43.1
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.5e-19 99.0 116 43.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.5e-19 99.0 116 44.8
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.5e-19 99.0 116 42.2
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 3.3e-19 98.6 113 43.4
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.3e-19 98.6 119 40.3
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.3e-19 98.6 122 45.1
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 4.3e-19 98.2 118 40.7
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 4.3e-19 98.2 122 40.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 5.6e-19 97.8 118 41.5
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.6e-19 97.8 120 42.5
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.6e-19 97.8 126 40.5
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 5.6e-19 97.8 121 40.5
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 7.3e-19 97.4 117 40.2
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 7.3e-19 97.4 113 44.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-19 97.4 113 44.2
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-19 97.4 113 44.2
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.2e-18 96.7 118 40.7
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.2e-18 96.7 123 39.0
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.2e-18 96.7 118 39.8
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.6e-18 96.3 124 40.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.6e-18 96.3 124 40.3
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-18 96.3 116 38.8
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-18 96.3 116 38.8
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.6e-18 96.3 116 43.1
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.8e-18 95.5 117 42.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.8e-18 95.5 118 40.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 3.6e-18 95.1 118 40.7
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 3.6e-18 95.1 116 41.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.6e-18 95.1 116 41.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 3.6e-18 95.1 116 43.1
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 3.6e-18 95.1 123 37.4
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.6e-18 95.1 120 45.0
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.7e-18 94.7 116 41.4
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.7e-18 94.7 116 37.9
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 4.7e-18 94.7 116 43.1
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 6.2e-18 94.4 119 41.2
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 8.0e-18 94.0 110 42.7
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.4e-17 93.2 113 41.6
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.4e-17 93.2 116 41.4
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.1e-17 92.0 113 41.6
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 6.8e-17 90.9 118 39.0
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 8.9e-17 90.5 125 39.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 8.9e-17 90.5 113 41.6
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.2e-16 90.1 116 37.9
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-16 89.7 118 39.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-16 88.6 117 41.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-16 88.6 118 39.0
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 5.8e-16 87.8 118 39.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 5.8e-16 87.8 115 43.5
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 7.5e-16 87.4 116 35.3
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 9.8e-16 87.0 116 38.8
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.7e-15 86.3 128 36.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.9e-15 85.5 118 35.6
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 6.4e-15 84.3 61 55.7
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 8.3e-15 84.0 103 42.7
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.1e-14 83.6 117 38.5
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-14 83.6 156 32.7
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.4e-14 83.2 121 37.2
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.9e-14 82.8 115 35.7
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.4e-14 82.4 126 39.7
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 3.2e-14 82.0 106 40.6
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 4.1e-14 81.6 121 37.2
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.0e-14 80.9 114 39.5
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 7.0e-14 80.9 110 39.1
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 9.2e-14 80.5 114 39.5
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.2e-13 80.1 109 38.5
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.7e-13 79.0 119 37.0
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 4.6e-13 78.2 114 39.5
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 4.6e-13 78.2 114 38.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-12 76.6 116 37.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.3e-12 75.9 103 41.7
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 2.3e-12 75.9 130 33.8
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.0e-12 75.5 107 48.6
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.9e-12 75.1 136 33.8
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.9e-12 75.1 61 52.5
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-11 73.2 121 33.9
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 3.3e-11 72.0 116 31.9
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 4.3e-11 71.6 120 33.3
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-10 70.1 114 37.7
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.2e-10 70.1 112 31.2
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-10 68.9 108 35.2
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 6.8e-09 64.3 114 34.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 8.9e-09 63.9 54 46.3
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 8.9e-09 63.9 28 82.1
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.7e-07 59.7 112 26.8
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.9e-06 56.2 28 71.4
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-06 55.5 29 69.0
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 4.1e-06 55.1 54 46.3
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 9.2e-06 53.9 104 29.8


User provided reference genes

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