Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 2229.1 1149 100.0
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1994.2 1136 92.3
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1924.4 1173 86.3
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1909.8 1173 86.0
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1870.9 1173 84.6
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1758.8 1159 82.0
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1419.8 1182 65.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1383.2 1171 65.0
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1363.2 1184 63.2
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1334.7 1040 66.0
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1323.9 1163 62.5
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1319.3 1170 62.1
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1315.4 1171 61.2
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1300.8 1037 65.0
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1298.5 1141 62.1
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1292.3 1136 62.1
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1283.9 1162 60.2
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1278.5 1158 61.4
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1170 60.4
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1276.9 1168 61.0
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1271.5 1166 59.7
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1262.7 1162 60.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1262.7 1167 59.9
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1260.4 1202 59.0
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1258.0 1167 59.6
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1255.4 1144 58.7
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1245.7 1226 56.5
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1241.5 1165 59.7
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1235.3 1173 58.5
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1234.9 1160 58.0
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1234.2 1167 59.2
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1233.0 1160 58.1
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1232.6 1167 59.0
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1231.5 1166 57.3
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1229.5 1261 54.1
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1229.5 1169 58.4
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1227.6 1166 59.1
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1222.6 1182 57.3
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1220.7 1177 57.5
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1219.5 1160 58.0
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1215.3 1158 58.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1214.1 1171 58.8
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1212.2 1164 57.7
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1209.1 1170 57.9
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1207.6 1167 57.0
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1205.3 1160 58.6
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1203.0 1164 56.6
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1201.8 1179 56.7
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1195.3 1166 57.3
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1194.9 1126 59.3
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1192.9 1161 56.6
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1192.6 1037 59.4
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1192.2 1163 57.3
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1190.3 1162 57.7
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1184.1 1166 56.9
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1172.1 1066 62.0
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1170.6 1162 55.9
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1169.5 1209 55.0
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1164.1 948 63.2
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1163.3 1167 55.4
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1158.3 1167 55.8
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1142.1 1127 56.1
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1140.6 1086 58.6
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1128.2 1189 54.8
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1122.5 1190 52.9
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1113.6 1162 52.9
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1112.4 1359 50.8
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1109.7 1167 55.1
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1109.7 1167 55.1
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1109.0 1158 52.0
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1107.4 1159 54.5
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1106.3 1168 52.4
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1100.5 1153 54.1
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1088.9 1656 42.7
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1083.9 1142 53.7
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1080.9 1166 52.0
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1078.9 1155 52.9
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 3.3e-308 1062.0 996 57.1
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 3.1e-306 1055.4 1152 53.5
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 2.0e-305 1052.7 1163 52.0
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 1.4e-295 1020.0 1133 50.1
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 2.4e-295 1019.2 1163 50.4
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 4.3e-292 1008.4 1166 50.2
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.1e-284 983.8 1171 48.2
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 7.8e-278 961.1 1157 47.5
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 9.9e-273 944.1 1244 45.9
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 9.3e-255 884.4 975 51.1
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 4.6e-246 855.5 1195 43.1
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.4e-236 822.4 720 58.2
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 3.2e-223 779.6 730 55.9
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 4.4e-212 742.7 832 53.4
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 7.0e-210 735.3 1044 42.8
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 5.0e-200 702.6 637 57.9
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 3.4e-188 663.3 794 49.6
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 9.8e-188 661.8 664 55.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.3e-187 661.4 656 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 3.6e-182 643.3 1048 38.8
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.3e-181 640.6 660 54.5
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.5e-180 637.9 972 38.7
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 6.8e-173 612.5 1033 36.4
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.8e-158 563.9 1198 35.9
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 2.2e-155 554.3 547 55.9
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 8.7e-152 542.3 1178 35.4
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 1.2e-129 468.8 1229 30.4
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 2.6e-108 397.9 429 53.8
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.3e-102 379.0 427 55.0
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.5e-58 232.6 179 62.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.7e-54 219.2 275 40.7
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.4e-32 146.4 118 60.2
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 6.0e-28 131.0 140 64.3
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 6.7e-27 127.5 271 30.3
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 5.0e-14 84.7 70 62.9
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 9.4e-13 80.5 93 43.0
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 4.6e-12 78.2 157 33.8
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 7.9e-12 77.4 81 51.9
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 1.1e-10 73.6 60 65.0
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 5.3e-08 64.7 36 72.2
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 6.9e-08 64.3 42 69.0
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 9.1e-08 63.9 48 62.5
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 3.4e-07 62.0 36 75.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 5.0e-06 58.2 36 66.7


User provided reference genes

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