Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005180g0060 Nicotiana tabacum HOM05D000947 ORTHO05D000079 1.8e-50 202.2 99 100.0
Nitab4.5_0001097g0070 Nicotiana tabacum HOM05D000947 ORTHO05D000079 3.5e-33 144.8 180 50.0
Nitab4.5_0007972g0010 Nicotiana tabacum HOM05D000947 ORTHO05D000079 6.8e-21 104.0 78 70.5
Sopen05g032880 Solanum pennellii HOM05D000947 ORTHO05D000079 1.9e-18 95.9 166 40.4
CAN.G1013.35 Capsicum annuum HOM05D000947 ORTHO05D000079 1.6e-17 92.8 176 37.5
Solyc05g054400.3 Solanum lycopersicum HOM05D000947 ORTHO05D000079 4.6e-17 91.3 167 40.1
PGSC0003DMG400023434 Solanum tuberosum HOM05D000947 ORTHO05D000079 4.6e-17 91.3 167 40.1
CAN.G1013.36 Capsicum annuum HOM05D000947 ORTHO05D000079 2.3e-16 89.0 174 37.4
SGA_v2.0_scaffold444G51713 Striga asiatica HOM05D000947 ORTHO05D000079 3.3e-15 85.1 150 37.3
MSTRG.10130 Avicennia marina HOM05D000947 ORTHO05D000079 1.2e-14 83.2 151 36.4
SalBow8G4529 Salvia bowleyana HOM05D000947 ORTHO05D000079 1.2e-14 83.2 158 35.4
Lj3A827T61 Lonicera japonica HOM05D000947 ORTHO05D000079 2.1e-14 82.4 150 39.3
unitig_88.g27708 Utricularia gibba HOM05D000947 ORTHO05D000079 1.4e-13 79.7 135 39.3
Actinidia40348 Actinidia chinensis HOM05D000947 ORTHO05D000079 2.3e-13 79.0 141 39.7
CSS0047505 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 5.2e-13 77.8 141 40.4
Dinv02069 Davidia involucrata HOM05D000947 ORTHO05D000079 5.2e-13 77.8 145 38.6
Dinv44322 Davidia involucrata HOM05D000947 ORTHO05D000079 5.2e-13 77.8 51 76.5
Peaxi162Scf00102g00111 Petunia axillaris HOM05D000947 ORTHO05D000079 6.8e-13 77.4 168 35.1
Rhsim02G0006100 Rhododendron simsii HOM05D000947 ORTHO05D000079 6.8e-13 77.4 139 39.6
Hma1.2p1_0078F.1_g040180 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 1.5e-12 76.3 137 39.4
Actinidia15578 Actinidia chinensis HOM05D000947 ORTHO05D000079 2.0e-12 75.9 139 40.3
HanXRQChr13g0394421 Helianthus annuus HOM05D000947 ORTHO05D000079 3.4e-12 75.1 161 34.8
Rhsim04G0231900 Rhododendron simsii HOM05D000947 ORTHO05D000079 3.4e-12 75.1 145 39.3
SalBow8G3102 Salvia bowleyana HOM05D000947 ORTHO05D000079 4.4e-12 74.7 53 67.9
Migut.G00106 Erythranthe guttata HOM05D000947 ORTHO05D000079 7.5e-12 73.9 158 34.2
Lsat_1_v5_gn_6_115200 Lactuca sativa HOM05D000947 ORTHO05D000079 1.3e-11 73.2 168 33.9
CSS0035673 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 1.7e-11 72.8 48 77.1
SGA_v2.0_scaffold18G08377 Striga asiatica HOM05D000947 ORTHO05D000079 2.2e-11 72.4 147 34.0
Solyc12g099370.2 Solanum lycopersicum HOM05D000947 ORTHO05D000079 2.9e-11 72.0 165 33.3
Sopen12g034040 Solanum pennellii HOM05D000947 ORTHO05D000079 2.9e-11 72.0 165 33.3
PGSC0003DMG400004624 Solanum tuberosum HOM05D000947 ORTHO05D000079 2.9e-11 72.0 165 33.3
vmacro15201 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 2.9e-11 72.0 53 66.0
Prupe.1G126000 Prunus persica HOM05D000947 ORTHO05D000079 8.3e-11 70.5 133 39.8
MELO3C006696.2 Cucumis melo HOM05D000947 ORTHO05D000079 1.1e-10 70.1 144 36.8
MD13G1159000 Malus domestica HOM05D000947 ORTHO05D000079 1.1e-10 70.1 133 39.8
CiPaw.02G077400 Carya illinoinensis HOM05D000947 ORTHO05D000079 1.4e-10 69.7 130 38.5
Lsat_1_v5_gn_6_19400 Lactuca sativa HOM05D000947 ORTHO05D000079 1.4e-10 69.7 162 34.0
Nn3g21608 Nelumbo nucifera HOM05D000947 ORTHO05D000079 1.4e-10 69.7 49 67.3
Nitab4.5_0003484g0090 Nicotiana tabacum HOM05D000947 ORTHO05D000079 1.4e-10 69.7 176 33.5
vmacro08079 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 1.4e-10 69.7 146 37.7
Actinidia13373 Actinidia chinensis HOM05D000947 ORTHO05D000079 1.9e-10 69.3 137 38.0
Oeu006436.1 Olea europaea HOM05D000947 ORTHO05D000079 1.9e-10 69.3 134 35.1
Sabra08G0149800 Salix brachista HOM05D000947 ORTHO05D000079 1.9e-10 69.3 48 68.8
Actinidia14268 Actinidia chinensis HOM05D000947 ORTHO05D000079 2.4e-10 68.9 48 70.8
Potri.008G213900 Populus trichocarpa HOM05D000947 ORTHO05D000079 2.4e-10 68.9 135 37.0
Cfa015476 Carpinus fangiana HOM05D000947 ORTHO05D000079 3.2e-10 68.6 139 37.4
Haze_01093 Corylus avellana HOM05D000947 ORTHO05D000079 3.2e-10 68.6 139 37.4
CAN.G484.54 Capsicum annuum HOM05D000947 ORTHO05D000079 5.4e-10 67.8 167 32.9
DCAR_027021 Daucus carota HOM05D000947 ORTHO05D000079 5.4e-10 67.8 48 70.8
Nitab4.5_0000570g0300 Nicotiana tabacum HOM05D000947 ORTHO05D000079 5.4e-10 67.8 177 32.8
MSTRG.3873 Avicennia marina HOM05D000947 ORTHO05D000079 7.1e-10 67.4 52 63.5
Cc03_g01210 Coffea canephora HOM05D000947 ORTHO05D000079 9.2e-10 67.0 151 33.8
MD16G1159200 Malus domestica HOM05D000947 ORTHO05D000079 9.2e-10 67.0 133 39.1
A06p38440 Brassica napus HOM05D000947 ORTHO05D000079 1.2e-09 66.6 124 37.9
ClCG05G006370 Citrullus lanatus HOM05D000947 ORTHO05D000079 1.2e-09 66.6 143 36.4
HanXRQChr02g0049061 Helianthus annuus HOM05D000947 ORTHO05D000079 1.2e-09 66.6 155 33.5
TWI53G1518 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 1.6e-09 66.2 138 36.2
Ciclev10006161m.g Citrus clementina HOM05D000947 ORTHO05D000079 2.1e-09 65.9 55 61.8
Manes.03G201300 Manihot esculenta HOM05D000947 ORTHO05D000079 2.1e-09 65.9 140 36.4
Sp2g19650 Schrenkiella parvula HOM05D000947 ORTHO05D000079 2.1e-09 65.9 127 38.6
Thhalv10005103m.g Eutrema salsugineum HOM05D000947 ORTHO05D000079 2.7e-09 65.5 113 38.9
Manes.15G007100 Manihot esculenta HOM05D000947 ORTHO05D000079 2.7e-09 65.5 139 35.3
Oeu016477.1 Olea europaea HOM05D000947 ORTHO05D000079 2.7e-09 65.5 125 35.2
AL8G22900 Arabidopsis lyrata HOM05D000947 ORTHO05D000079 3.5e-09 65.1 126 37.3
GSVIVG01035048001 Vitis vinifera HOM05D000947 ORTHO05D000079 3.5e-09 65.1 55 61.8
BcaNung02595 Brassica carinata HOM05D000947 ORTHO05D000079 4.6e-09 64.7 124 37.1
C07p39830 Brassica napus HOM05D000947 ORTHO05D000079 4.6e-09 64.7 124 37.1
BolC7t44511H Brassica oleracea HOM05D000947 ORTHO05D000079 4.6e-09 64.7 124 37.1
BraA06t26758Z Brassica rapa HOM05D000947 ORTHO05D000079 4.6e-09 64.7 113 37.2
CiPaw.01G142600 Carya illinoinensis HOM05D000947 ORTHO05D000079 4.6e-09 64.7 135 35.6
AUR62035068 Chenopodium quinoa HOM05D000947 ORTHO05D000079 4.6e-09 64.7 122 39.3
CsaV3_3G015000 Cucumis sativus L. HOM05D000947 ORTHO05D000079 4.6e-09 64.7 112 41.1
ECA233G3444 Erigeron canadensis HOM05D000947 ORTHO05D000079 6.0e-09 64.3 57 56.1
CANSAT78G2367 Cannabis sativa HOM05D000947 ORTHO05D000079 7.8e-09 63.9 51 64.7
Cpa.g.sc9.102 Carica papaya HOM05D000947 ORTHO05D000079 7.8e-09 63.9 141 35.5
TWI73G0953 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 7.8e-09 63.9 141 36.9
BcaB07g34146 Brassica carinata HOM05D000947 ORTHO05D000079 1.0e-08 63.5 121 37.2
Sabra14G0092500 Salix brachista HOM05D000947 ORTHO05D000079 1.0e-08 63.5 133 33.1
TWI09G0287 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 1.0e-08 63.5 137 37.2
Thecc.04G294500 Theobroma cacao HOM05D000947 ORTHO05D000079 1.3e-08 63.2 144 34.7
Cpa.g.sc151.51 Carica papaya HOM05D000947 ORTHO05D000079 1.7e-08 62.8 84 45.2
Eucgr.H04023 Eucalyptus grandis HOM05D000947 ORTHO05D000079 1.7e-08 62.8 48 64.6
VMungo1383G0309 Vigna mungo HOM05D000947 ORTHO05D000079 1.7e-08 62.8 101 42.6
Nn4g25675 Nelumbo nucifera HOM05D000947 ORTHO05D000079 2.3e-08 62.4 139 33.8
Phvul.001G226500 Phaseolus vulgaris HOM05D000947 ORTHO05D000079 2.3e-08 62.4 90 46.7
Potri.010G001300 Populus trichocarpa HOM05D000947 ORTHO05D000079 2.3e-08 62.4 42 69.0
TAR362G0689 Trochodendron aralioides HOM05D000947 ORTHO05D000079 2.3e-08 62.4 145 35.9
Aa31LG11G7830 Aethionema arabicum HOM05D000947 ORTHO05D000079 3.0e-08 62.0 119 37.0
Sed0006924 Sechium edule HOM05D000947 ORTHO05D000079 3.0e-08 62.0 144 34.7
QL06p011255 Quercus lobata HOM05D000947 ORTHO05D000079 3.9e-08 61.6 48 66.7
TAR636G3276 Trochodendron aralioides HOM05D000947 ORTHO05D000079 3.9e-08 61.6 140 35.0
Ah.04g154950 Amaranthus hybridus HOM05D000947 ORTHO05D000079 6.6e-08 60.8 48 62.5
AT5G49300 Arabidopsis thaliana HOM05D000947 ORTHO05D000079 6.6e-08 60.8 127 33.1
Dinv10059 Davidia involucrata HOM05D000947 ORTHO05D000079 6.6e-08 60.8 128 33.6
Glyma.03G232900 Glycine max HOM05D000299 ORTHO05D000079 6.6e-08 60.8 66 53.0
PGR004G0579 Punica granatum HOM05D000947 ORTHO05D000079 6.6e-08 60.8 48 64.6
Glyma.19G229900 Glycine max HOM05D000947 ORTHO05D000079 8.6e-08 60.5 100 42.0
Peaxi162Scf00017g00611 Petunia axillaris HOM05D000947 ORTHO05D000079 8.6e-08 60.5 177 31.6
Psat0s1646g0400 Pisum sativum HOM05D000947 ORTHO05D000079 8.6e-08 60.5 48 58.3
Potri.002G199800 Populus trichocarpa HOM05D000947 ORTHO05D000079 8.6e-08 60.5 136 33.1
arahy.Tifrunner.gnm1.ann1.C126L3 Arachis hypogaea HOM05D000947 ORTHO05D000079 1.1e-07 60.1 144 31.9
CARHR182300 Cardamine hirsuta HOM05D000947 ORTHO05D000079 1.1e-07 60.1 130 36.2
Gorai.002G029400 Gossypium raimondii HOM05D000947 ORTHO05D000079 1.1e-07 60.1 134 35.8
Sabra10G0001000 Salix brachista HOM05D000947 ORTHO05D000079 1.1e-07 60.1 50 66.0
unitig_32.g10638 Utricularia gibba HOM05D000947 ORTHO05D000079 1.1e-07 60.1 147 31.3
ECA246G1347 Erigeron canadensis HOM05D000947 ORTHO05D000079 1.5e-07 59.7 130 30.8
unitig_32.g11857 Utricularia gibba HOM05D000947 ORTHO05D000079 1.5e-07 59.7 146 31.5
arahy.Tifrunner.gnm1.ann1.FDN5YK Arachis hypogaea HOM05D000947 ORTHO05D000079 1.9e-07 59.3 52 57.7
Cc02_g30320 Coffea canephora HOM05D000947 ORTHO05D000079 1.9e-07 59.3 101 38.6
Potri.014G124400 Populus trichocarpa HOM05D000947 ORTHO05D000079 2.5e-07 58.9 129 35.7
Hund03096 Selenicereus undatus HOM05D000947 ORTHO05D000079 3.3e-07 58.5 145 31.7
VMungo1215G1095 Vigna mungo HOM05D000947 ORTHO05D000079 3.3e-07 58.5 54 59.3
C02p57190 Brassica napus HOM05D000947 ORTHO05D000079 4.3e-07 58.2 124 37.1
AUR62008744 Chenopodium quinoa HOM05D000947 ORTHO05D000079 4.3e-07 58.2 94 40.4
Medtr4g121110 Medicago truncatula HOM05D000947 ORTHO05D000079 4.3e-07 58.2 50 60.0
RcHm_v2.0_Chr4g0424251 Rosa chinensis HOM05D000947 ORTHO05D000079 5.6e-07 57.8 143 33.6
Ah.08g213480 Amaranthus hybridus HOM05D000947 ORTHO05D000079 7.3e-07 57.4 117 35.0
Eucgr.A00193 Eucalyptus grandis HOM05D000947 ORTHO05D000079 7.3e-07 57.4 132 37.1
FvH4_4g19260 Fragaria vesca HOM05D000947 ORTHO05D000079 7.3e-07 57.4 143 33.6
FAN12G1806 Fragaria x ananassa HOM05D000947 ORTHO05D000079 7.3e-07 57.4 143 33.6
FAN12G3889 Fragaria x ananassa HOM05D000947 ORTHO05D000079 7.3e-07 57.4 143 33.6
Glyma.07G243000 Glycine max HOM05D000947 ORTHO05D000079 7.3e-07 57.4 127 36.2
Gohir.A01G033700 Gossypium hirsutum HOM05D000947 ORTHO05D000079 7.3e-07 57.4 96 38.5
Hund11950 Selenicereus undatus HOM05D000947 ORTHO05D000079 7.3e-07 57.4 60 53.3
Aa31LG5G17330 Aethionema arabicum HOM05D000947 ORTHO05D000079 9.5e-07 57.0 93 39.8
EL10Ac3g04929 Beta vulgaris HOM05D000947 ORTHO05D000079 9.5e-07 57.0 48 58.3
Gohir.D01G023517 Gossypium hirsutum HOM05D000947 ORTHO05D000079 9.5e-07 57.0 96 38.5
Sabra02G0158600 Salix brachista HOM05D000947 ORTHO05D000079 9.5e-07 57.0 135 32.6
BcaC03g17712 Brassica carinata HOM05D000947 ORTHO05D000079 1.2e-06 56.6 123 35.0
A02p37990 Brassica napus HOM05D000947 ORTHO05D000079 1.2e-06 56.6 110 36.4
AUR62009149 Chenopodium quinoa HOM05D000947 ORTHO05D000079 1.2e-06 56.6 83 41.0
COL.COLO4_34678 Corchorus olitorius HOM05D000947 ORTHO05D000079 1.2e-06 56.6 58 55.2
CsaV3_6G022580 Cucumis sativus L. HOM05D000947 ORTHO05D000079 1.2e-06 56.6 136 30.9
Phvul.003G110400 Phaseolus vulgaris HOM05D000947 ORTHO05D000079 1.2e-06 56.6 54 53.7
Sed0027633 Sechium edule HOM05D000947 ORTHO05D000079 1.2e-06 56.6 96 39.6
Carub.0003s0628 Capsella rubella HOM05D000947 ORTHO05D000079 1.6e-06 56.2 58 51.7
CDE11G0437 Ceratophyllum demersum HOM05D000947 ORTHO05D000079 1.6e-06 56.2 115 34.8
Atru.chr4.2949 Acer truncatum HOM05D000947 ORTHO05D000079 2.1e-06 55.8 55 52.7
ATR0053G048 Amborella trichopoda HOM05D000947 ORTHO05D000079 2.1e-06 55.8 101 37.6
arahy.Tifrunner.gnm1.ann1.36H91F Arachis hypogaea HOM05D000947 ORTHO05D000079 2.1e-06 55.8 48 60.4
arahy.Tifrunner.gnm1.ann1.QR3GWV Arachis hypogaea HOM05D000947 ORTHO05D000079 2.1e-06 55.8 48 60.4
ClCG06G004790 Citrullus lanatus HOM05D000947 ORTHO05D000079 2.1e-06 55.8 135 31.9
Lj6A684T57 Lonicera japonica HOM05D000947 ORTHO05D000079 2.1e-06 55.8 63 55.6
Lalb_Chr13g0298321 Lupinus albus HOM05D000947 ORTHO05D000079 2.1e-06 55.8 46 56.5
MELO3C021288.2 Cucumis melo HOM05D000947 ORTHO05D000079 2.8e-06 55.5 48 52.1
Hma1.2p1_0013F.1_g008970 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 2.8e-06 55.5 41 68.3
Sed0004649 Sechium edule HOM05D000947 ORTHO05D000079 2.8e-06 55.5 41 63.4
THA.LOC104820276 Tarenaya hassleriana HOM05D000947 ORTHO05D000079 2.8e-06 55.5 49 61.2
CAN.G197.21 Capsicum annuum HOM05D000947 ORTHO05D000079 3.6e-06 55.1 116 32.8
DCAR_030484 Daucus carota HOM05D000947 ORTHO05D000079 3.6e-06 55.1 54 53.7
Duzib212G0811 Durio zibethinus HOM05D000947 ORTHO05D000079 3.6e-06 55.1 151 34.4
Glyma.17G030900 Glycine max HOM05D000947 ORTHO05D000079 3.6e-06 55.1 58 51.7
Gohir.D02G057800 Gossypium hirsutum HOM05D000947 ORTHO05D000079 3.6e-06 55.1 153 33.3
PSO170G2932 Papaver somniferum HOM05D000947 ORTHO05D000079 3.6e-06 55.1 48 58.3
PSO357G0116 Papaver somniferum HOM05D000947 ORTHO05D000079 3.6e-06 55.1 48 58.3
Aa31LG11G9760 Aethionema arabicum HOM05D000947 ORTHO05D000079 4.7e-06 54.7 82 40.2
FAN07G1787 Fragaria x ananassa HOM05D000947 ORTHO05D000079 4.7e-06 54.7 49 55.1
Manes.01G224400 Manihot esculenta HOM05D000947 ORTHO05D000079 4.7e-06 54.7 129 31.8
Nitab4.5_0000803g0070 Nicotiana tabacum HOM05D000947 ORTHO05D000079 4.7e-06 54.7 109 34.9
Actinidia21512 Actinidia chinensis HOM05D000947 ORTHO05D000079 6.2e-06 54.3 142 31.7
Gohir.A02G052901 Gossypium hirsutum HOM05D000947 ORTHO05D000079 6.2e-06 54.3 57 52.6
Gorai.005G065300 Gossypium raimondii HOM05D000947 ORTHO05D000079 6.2e-06 54.3 57 52.6
Lj4g0003510 Lotus japonicus HOM05D000947 ORTHO05D000079 6.2e-06 54.3 52 53.8
MBI18_g04586_MAGBIO Magnolia biondii HOM05D000947 ORTHO05D000079 6.2e-06 54.3 122 35.2
PGR031G2113 Punica granatum HOM05D000947 ORTHO05D000079 6.2e-06 54.3 49 55.1
Duzib052G0902 Durio zibethinus HOM05D000947 ORTHO05D000079 8.1e-06 53.9 59 49.2
Duzib151G1181 Durio zibethinus HOM05D000947 ORTHO05D000079 8.1e-06 53.9 59 47.5
SHI00182 Sapria himalayana HOM05D000947 ORTHO05D000079 8.1e-06 53.9 36 66.7


User provided reference genes

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