Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 0.0e+00 1171.8 644 100.0
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 0.0e+00 1115.5 642 94.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 8.3e-277 956.8 651 80.8
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.3e-274 949.5 642 80.5
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.2e-270 936.4 642 77.3
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.7e-269 932.6 644 78.7
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.2e-264 916.4 642 79.9
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.1e-203 713.0 648 60.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 4.3e-201 705.3 616 61.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.8e-200 702.6 616 60.4
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.9e-197 692.6 618 60.8
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 4.5e-190 668.7 616 55.7
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.9e-189 666.0 618 57.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.5e-188 662.9 627 56.9
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.2e-187 660.6 617 56.6
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.6e-187 660.2 615 57.6
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.4e-186 657.1 618 58.6
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.5e-185 653.7 623 56.0
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 3.3e-185 652.5 624 54.8
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 3.3e-185 652.5 621 55.9
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.4e-185 652.1 623 56.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.3e-184 650.6 619 56.7
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 8.2e-184 647.9 621 56.0
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 8.2e-184 647.9 620 55.8
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.1e-183 647.5 520 66.0
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 7.0e-183 644.8 620 56.6
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 9.1e-183 644.4 624 57.7
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.6e-182 643.7 654 52.6
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.6e-182 642.9 645 55.0
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.5e-182 642.5 562 61.2
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.9e-180 636.7 621 55.2
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.2e-180 636.0 630 54.6
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.4e-180 634.4 623 53.8
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.6e-179 633.6 618 54.4
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.7e-179 632.9 620 55.6
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.7e-179 632.9 616 53.7
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 2.7e-179 632.9 617 54.3
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.3e-178 629.8 621 53.9
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.0e-178 629.4 623 54.7
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 5.2e-178 628.6 619 54.4
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 5.2e-178 628.6 621 53.5
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 8.8e-178 627.9 614 54.6
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 8.8e-178 627.9 648 53.4
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 9.7e-177 624.4 647 54.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 8.2e-176 621.3 619 54.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.1e-175 620.9 615 52.8
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 3.1e-175 619.4 621 53.6
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.1e-175 619.4 623 53.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 5.3e-175 618.6 622 53.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.0e-174 616.7 620 52.6
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 2.9e-173 612.8 621 53.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.8e-173 612.5 624 53.8
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.0e-173 612.1 630 53.3
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.5e-172 610.5 618 53.1
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.5e-172 610.5 619 54.3
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.5e-172 610.5 628 52.1
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 3.2e-172 609.4 621 53.8
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 9.4e-172 607.8 620 53.2
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.6e-171 607.1 623 53.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.6e-171 607.1 615 53.2
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.6e-171 605.9 617 52.8
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.8e-170 603.6 619 52.8
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 8.8e-170 601.3 478 66.1
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.5e-169 600.5 642 53.0
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 2.0e-169 600.1 626 53.4
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 4.4e-169 599.0 577 56.8
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.7e-166 589.7 673 48.6
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.7e-166 588.2 617 52.0
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.7e-165 587.0 621 52.0
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.9e-164 583.6 588 53.4
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 3.3e-164 582.8 621 51.2
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.3e-164 582.8 577 55.1
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.0e-162 577.8 620 51.3
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 3.0e-162 576.2 628 50.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.3e-160 570.9 618 50.5
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.7e-160 569.3 621 50.6
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.1e-159 567.8 617 53.0
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.8e-159 567.0 621 51.7
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.2e-158 564.3 619 50.2
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 5.9e-158 562.0 507 58.8
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.0e-157 561.2 557 55.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.9e-157 559.7 662 48.8
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.9e-157 559.7 624 51.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.8e-157 559.3 604 52.3
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.9e-156 557.0 622 50.0
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.6e-155 553.9 622 49.7
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.3e-154 550.1 615 49.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.5e-153 547.4 619 48.9
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.5e-153 547.4 617 49.3
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.0e-153 547.0 622 49.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 7.5e-153 545.0 620 49.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.3e-152 544.3 577 52.5
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-152 544.3 560 52.5
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.9e-152 543.1 628 48.7
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.9e-152 543.1 620 48.7
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 4.9e-152 542.3 616 49.2
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 4.9e-152 542.3 616 49.2
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 6.4e-152 542.0 635 49.3
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 9.2e-151 538.1 583 51.3
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.2e-150 537.7 615 49.3
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.2e-150 537.7 615 49.3
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.0e-150 537.0 659 47.3
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 3.5e-150 536.2 615 49.1
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 7.8e-150 535.0 629 48.0
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.0e-149 534.6 618 49.0
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.3e-149 533.5 638 50.8
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.3e-149 533.5 556 51.4
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.5e-148 530.0 520 53.8
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 9.5e-148 528.1 592 49.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 9.5e-148 528.1 647 48.5
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 8.9e-146 521.5 538 53.2
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 5.8e-145 518.8 617 48.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.2e-144 516.9 480 58.3
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.9e-144 515.8 596 48.3
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.6e-142 510.8 694 43.9
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.3e-141 507.7 525 54.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.7e-139 499.2 645 46.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 3.1e-138 496.5 478 54.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.1e-135 488.0 581 48.0
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.4e-135 485.7 517 52.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.7e-133 480.7 496 52.4
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.1e-130 471.5 629 46.4
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.9e-130 468.4 617 45.4
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.8e-128 463.0 527 49.9
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.2e-120 437.2 421 55.3
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.2e-113 414.8 495 48.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.3e-108 396.4 464 49.6
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.3e-108 396.4 464 49.6
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.7e-107 393.3 612 39.9
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.5e-105 387.9 552 43.1
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.5e-105 387.9 699 36.3
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 8.4e-104 382.1 466 48.1
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.1e-102 377.5 615 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.6e-102 376.3 500 42.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 4.8e-99 366.3 619 40.2
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.7e-94 350.5 518 42.3
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 9.7e-92 342.0 378 51.1
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.4e-74 284.3 555 38.2
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.6e-62 245.0 514 34.2
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.2e-60 238.8 272 52.2
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.5e-49 200.7 362 37.3
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.7e-44 183.3 176 50.6
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 6.3e-43 179.9 120 70.8
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 3.9e-40 170.6 195 45.1
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.7e-24 118.6 62 85.5
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.2e-22 112.5 166 45.2
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.6e-17 94.0 207 30.0
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 8.9e-13 79.7 119 42.9
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-09 67.8 45 64.4
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.8e-06 58.2 49 51.0


User provided reference genes

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