Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.1e-243 846.3 456 100.0
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.1e-206 723.4 456 88.2
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 3.0e-164 582.4 459 70.8
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 7.4e-163 577.8 460 71.5
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.6e-162 576.6 460 72.0
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 4.8e-154 548.5 471 71.5
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 3.7e-138 495.7 456 64.3
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.5e-102 376.7 468 53.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.4e-100 370.9 469 52.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 4.6e-96 355.9 468 51.5
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.2e-93 347.8 338 60.1
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.6e-93 347.4 490 47.3
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 6.2e-93 345.5 477 50.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.6e-91 338.6 516 45.0
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 7.6e-91 338.6 350 57.7
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 6.4e-90 335.5 481 48.2
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.4e-89 334.3 470 48.9
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.2e-89 333.2 473 49.7
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 3.2e-89 333.2 463 49.0
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 5.4e-89 332.4 468 50.4
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 9.2e-89 331.6 372 53.5
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.6e-88 330.9 470 50.0
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 3.5e-88 329.7 469 52.0
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 3.5e-88 329.7 469 51.4
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 4.6e-88 329.3 343 53.9
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 6.0e-88 328.9 467 49.9
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 7.8e-88 328.6 475 46.5
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.3e-87 327.8 463 50.5
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.3e-87 327.0 473 46.7
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.3e-87 327.0 468 50.9
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.3e-87 327.0 456 47.1
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 3.9e-87 326.2 483 50.5
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 5.6e-86 322.4 479 47.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.2e-85 321.2 464 48.3
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.1e-85 320.5 479 44.7
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 8.1e-85 318.5 469 47.8
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.1e-84 318.2 363 53.2
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.1e-84 318.2 500 43.2
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.4e-84 317.8 491 43.4
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 3.1e-84 316.6 467 50.7
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 4.0e-84 316.2 460 48.5
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.5e-83 314.3 476 48.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.0e-83 313.9 469 45.0
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.4e-83 313.2 466 44.8
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 4.4e-83 312.8 471 43.5
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.1e-81 308.1 469 45.2
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.7e-80 303.5 481 45.7
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.7e-80 303.5 341 51.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 6.0e-80 302.4 462 47.6
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 3.9e-79 299.7 464 45.7
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 5.1e-79 299.3 470 46.6
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 8.7e-79 298.5 465 47.3
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.1e-78 298.1 339 52.5
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 5.6e-78 295.8 356 50.6
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 9.6e-78 295.0 532 42.3
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 9.6e-78 295.0 429 48.7
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 9.6e-78 295.0 475 45.3
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 9.6e-78 295.0 359 51.3
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 2.1e-77 293.9 433 45.0
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.4e-75 286.6 479 41.5
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 3.4e-75 286.6 299 59.2
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 7.6e-75 285.4 490 42.0
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 9.9e-75 285.0 460 43.7
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.2e-74 283.9 470 45.7
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 4.9e-74 282.7 465 44.3
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.4e-74 282.3 355 48.7
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 6.4e-74 282.3 485 43.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 4.2e-73 279.6 331 52.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 5.4e-73 279.3 356 50.0
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.6e-72 277.7 483 42.7
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.7e-72 276.9 366 47.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 6.0e-72 275.8 349 49.3
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.3e-71 274.6 432 43.1
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.8e-71 274.2 434 43.3
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.1e-70 271.6 431 43.4
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.5e-70 271.2 432 42.6
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 3.3e-70 270.0 469 43.5
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.0e-68 263.1 327 49.5
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.3e-68 262.7 331 51.4
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.8e-67 259.2 448 42.6
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.7e-66 257.7 449 42.1
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.7e-66 257.7 297 52.5
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.7e-66 257.7 298 52.0
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.9e-66 256.1 448 42.9
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.1e-65 255.0 474 37.1
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.1e-65 255.0 519 37.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.3e-63 248.1 323 48.3
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.3e-63 248.1 323 48.0
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-62 244.6 324 49.4
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 1.9e-62 244.2 316 46.8
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 4.3e-62 243.0 463 40.6
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.3e-61 241.5 361 50.4
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 9.0e-60 235.3 285 50.2
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.5e-59 233.0 253 52.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.0e-58 231.9 472 38.3
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.0e-58 231.9 345 44.3
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.3e-58 231.5 230 55.2
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.7e-58 231.1 278 51.1
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.7e-58 231.1 365 44.4
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 2.9e-58 230.3 253 51.8
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 2.9e-58 230.3 225 56.4
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.8e-58 229.9 225 56.4
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 3.8e-58 229.9 317 45.7
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 8.4e-58 228.8 225 56.9
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 8.4e-58 228.8 225 56.9
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 6.0e-56 222.6 231 55.0
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.3e-55 221.5 317 42.9
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.8e-55 221.1 221 56.1
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 3.0e-55 220.3 241 53.5
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.5e-54 217.2 271 49.1
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 4.3e-54 216.5 277 48.4
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 2.2e-53 214.2 318 43.1
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.1e-52 210.3 356 39.9
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.0e-51 207.6 216 53.7
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-50 204.1 198 60.6
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 3.9e-47 193.4 317 40.7
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.7e-46 189.5 332 41.3
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.7e-45 188.0 219 51.6
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 2.6e-43 180.6 115 80.0
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.3e-42 178.3 372 36.8
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.2e-42 177.6 205 50.2
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.9e-41 174.5 335 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.2e-40 171.8 365 36.4
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.6e-40 171.4 346 36.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 7.9e-40 169.1 221 46.2
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 4.8e-37 159.8 200 49.0
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.8e-34 150.2 252 42.1
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.5e-33 147.5 322 34.8
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 3.2e-33 147.1 344 34.3
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 7.2e-33 146.0 187 45.5
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.2e-33 146.0 99 73.7
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 3.6e-32 143.7 230 42.6
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.0e-31 142.1 174 49.4
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.7e-31 139.4 70 94.3
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 3.3e-30 137.1 185 43.8
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.1e-28 132.1 147 52.4
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 7.7e-27 125.9 102 62.7
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 3.8e-26 123.6 265 38.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 8.5e-26 122.5 71 81.7
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.5e-25 121.7 187 44.4
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.5e-25 120.9 278 37.1
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.2e-25 120.6 71 80.3
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 5.5e-25 119.8 149 48.3
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.2e-23 113.2 251 38.2
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-22 112.1 70 75.7
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 4.4e-22 110.2 285 34.0
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.3e-18 98.6 151 43.0
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 2.9e-18 97.4 199 37.7
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.5e-17 94.4 111 45.9
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.8e-15 85.9 264 32.2
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-14 85.5 264 32.2
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-14 85.5 264 32.2
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.7e-13 81.6 271 32.1
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.3e-13 79.3 136 38.2
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.4e-12 76.6 182 34.1
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.7e-10 71.6 157 36.3
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.3e-10 71.2 100 38.0
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.9e-10 70.9 60 61.7
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.2e-09 66.2 72 54.2
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 2.8e-08 64.3 52 55.8
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.9e-07 59.3 74 48.6
Cre01.g021750 Chlamydomonas reinhardtii HOM05D004030 ORTHO05D004952 1.5e-06 58.5 164 29.9


User provided reference genes

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