Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.0e-38 161.0 85 100.0
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 3.7e-23 111.3 81 72.8
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 3.7e-23 111.3 81 74.1
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.7e-23 111.3 83 72.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.4e-22 109.4 80 72.5
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.4e-22 109.4 81 74.1
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.4e-22 108.6 81 71.6
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 2.4e-22 108.6 81 72.8
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.5e-21 105.9 81 71.6
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.6e-21 105.1 81 71.6
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.8e-21 104.0 83 71.1
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.6e-21 103.6 81 65.4
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 7.6e-21 103.6 81 70.4
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.0e-20 103.2 81 66.7
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.0e-20 103.2 80 68.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.2e-20 102.1 81 67.9
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.8e-20 101.3 81 67.9
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 4.9e-20 100.9 85 65.9
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 4.9e-20 100.9 81 66.7
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 6.5e-20 100.5 81 66.7
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.4e-19 99.4 81 65.4
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.9e-19 99.0 79 67.1
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.9e-19 99.0 81 69.1
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.5e-19 97.4 81 61.7
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 9.3e-19 96.7 81 65.4
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.2e-18 96.3 81 64.2
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.6e-18 95.9 79 62.0
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.6e-18 95.9 81 64.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.1e-18 95.5 81 63.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.5e-18 94.7 81 60.5
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 3.5e-18 94.7 72 69.4
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.5e-18 94.7 81 61.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.5e-18 94.7 81 64.2
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.5e-18 94.7 81 64.2
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.6e-18 94.4 81 63.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 4.6e-18 94.4 79 64.6
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.6e-18 94.4 81 60.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 6.0e-18 94.0 81 69.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 6.0e-18 94.0 80 61.2
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 6.0e-18 94.0 80 61.2
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 7.9e-18 93.6 81 60.5
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 7.9e-18 93.6 81 60.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 7.9e-18 93.6 81 63.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.9e-18 93.6 81 60.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.0e-17 93.2 81 61.7
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.0e-17 93.2 82 64.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.3e-17 92.8 81 60.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-17 92.8 82 63.4
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.8e-17 92.4 81 60.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.8e-17 92.4 81 60.5
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.8e-17 92.4 81 59.3
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.8e-17 92.4 82 63.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.8e-17 92.4 81 60.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.3e-17 92.0 79 63.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 5.1e-17 90.9 79 60.8
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 6.7e-17 90.5 81 63.0
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 6.7e-17 90.5 81 63.0
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 6.7e-17 90.5 76 63.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 6.7e-17 90.5 81 63.0
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 8.7e-17 90.1 81 59.3
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 8.7e-17 90.1 81 58.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 8.7e-17 90.1 81 60.5
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.1e-16 89.7 81 60.5
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-16 89.4 81 60.5
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.9e-16 89.0 76 64.5
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.9e-16 89.0 72 63.9
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.5e-16 88.6 81 59.3
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.3e-16 88.2 81 61.7
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.3e-16 88.2 81 58.0
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.3e-16 88.2 82 59.8
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.3e-16 87.8 81 58.0
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.3e-16 87.8 82 61.0
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.3e-16 87.8 81 60.5
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 5.7e-16 87.4 81 59.3
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 7.4e-16 87.0 81 54.3
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.4e-16 87.0 81 58.0
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 9.7e-16 86.7 81 61.7
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.3e-15 86.3 81 59.3
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 2.2e-15 85.5 78 55.1
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.8e-15 85.1 81 59.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 3.7e-15 84.7 81 54.3
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 4.8e-15 84.3 88 55.7
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.8e-15 84.3 80 60.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 6.3e-15 84.0 81 58.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.1e-14 83.2 85 54.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.1e-14 83.2 65 63.1
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.4e-14 82.8 81 58.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-14 82.8 68 67.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.4e-14 82.8 81 55.6
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.4e-14 82.8 81 63.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 2.4e-14 82.0 81 60.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.1e-14 81.6 57 73.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 3.1e-14 81.6 78 57.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 3.1e-14 81.6 81 53.1
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 4.1e-14 81.3 81 55.6
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 4.1e-14 81.3 79 59.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.1e-14 81.3 81 54.3
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.1e-14 81.3 81 54.3
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.9e-14 80.5 80 56.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 9.0e-14 80.1 74 56.8
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 9.0e-14 80.1 88 53.4
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 9.0e-14 80.1 69 59.4
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.5e-13 79.3 81 50.6
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 2.0e-13 79.0 77 57.1
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.0e-13 79.0 85 52.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.6e-13 78.6 80 57.5
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 2.6e-13 78.6 77 57.1
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.4e-13 78.2 72 61.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.4e-13 78.2 71 62.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.4e-13 78.2 66 65.2
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 3.4e-13 78.2 81 56.8
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.5e-13 77.8 81 59.3
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.9e-13 77.4 77 55.8
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.7e-12 75.9 65 60.0
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.9e-12 75.1 78 52.6
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.0e-12 74.3 77 57.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 5.0e-12 74.3 77 54.5
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 5.0e-12 74.3 60 65.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 6.5e-12 73.9 74 52.7
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.5e-12 73.6 68 57.4
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 8.5e-12 73.6 53 73.6
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 8.5e-12 73.6 76 53.9
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 1.4e-11 72.8 81 56.8
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.4e-11 72.8 75 52.0
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.9e-11 72.4 72 56.9
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 2.5e-11 72.0 81 56.8
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.2e-11 71.6 81 49.4
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 4.2e-11 71.2 68 55.9
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.5e-11 70.9 77 54.5
PGSC0003DMG400024883 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.5e-11 70.9 80 56.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 9.4e-11 70.1 69 53.6
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.2e-10 69.7 65 53.8
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.6e-10 69.3 81 54.3
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.1e-10 68.9 81 50.6
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.1e-10 68.9 77 54.5
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-10 68.9 65 55.4
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.7e-10 68.6 83 47.0
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.6e-10 68.2 65 55.4
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.6e-10 68.2 79 53.2
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 4.6e-10 67.8 81 55.6
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 4.6e-10 67.8 65 56.9
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 6.1e-10 67.4 79 48.1
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 7.9e-10 67.0 81 53.1
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 7.9e-10 67.0 80 56.2
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.8e-09 65.9 82 54.9
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.3e-09 65.5 69 49.3
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.3e-09 65.5 81 53.1
Nitab4.5_0000787g0030 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-09 65.5 81 53.1
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.9e-09 64.7 41 78.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.9e-09 64.7 41 78.0
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.9e-09 64.7 41 78.0
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.3e-08 61.6 81 54.3
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.3e-08 61.6 61 52.5
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.3e-07 59.7 60 53.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.3e-07 59.7 78 47.4
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.7e-07 59.3 58 55.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.8e-07 57.8 82 43.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 6.3e-07 57.4 63 50.8
Cfa004471 Carpinus fangiana HOM05D004289 ORTHO05D005141 8.2e-07 57.0 52 53.8
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 8.2e-07 57.0 62 46.8
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.9e-06 53.9 71 45.1
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 9.1e-06 53.5 73 42.5


User provided reference genes

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