Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 2291.9 1212 100.0
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1689.5 1248 75.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1528.5 1261 68.4
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1518.4 1265 68.4
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1468.4 1257 67.1
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1466.8 1261 66.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1404.0 1242 65.4
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1331.6 1241 62.6
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1300.4 1271 61.1
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1292.3 1217 60.2
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1275.4 1217 59.2
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1259.6 1219 58.2
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1247.3 1250 56.7
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1238.0 1250 56.7
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1232.2 1213 57.0
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1228.0 1215 56.5
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1218.4 1275 54.7
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1216.4 1241 56.2
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1196.8 1295 54.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1194.5 1246 55.4
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1193.7 1148 57.7
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1192.9 1215 56.0
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1188.3 1223 55.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1187.6 1238 54.4
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1184.9 1259 55.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1183.3 1281 54.3
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1180.2 1216 55.1
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1176.4 1176 55.7
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1174.1 1246 54.0
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1172.5 1216 54.9
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1170.2 1292 52.9
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1169.1 1232 54.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1168.7 1188 56.1
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1168.7 1173 56.8
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1166.4 1213 55.6
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1165.6 1166 56.3
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1164.4 1219 54.6
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1162.9 1256 53.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1162.9 1249 54.0
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1162.1 1253 53.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1161.4 1251 53.0
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1160.2 1216 53.9
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1156.0 1289 52.8
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1156.0 1218 54.9
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1154.8 1246 53.2
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1147.1 1221 54.2
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1139.0 1236 54.1
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1137.9 1214 54.7
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1137.5 1231 53.4
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1135.9 1228 54.2
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1135.9 1171 55.5
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1135.6 1229 53.6
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1134.0 1188 54.8
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1131.7 1238 53.7
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1131.3 1230 53.6
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1130.2 1224 53.5
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1129.0 1188 54.3
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1128.2 1223 52.5
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1121.3 1231 54.1
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1119.8 1232 52.6
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1119.4 1231 54.0
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1116.7 1212 53.6
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1116.3 1279 52.3
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1114.8 1187 53.9
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1114.4 1205 52.6
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1114.4 1227 53.4
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1113.2 1242 53.8
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1111.7 1253 50.8
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1110.5 1225 53.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1108.6 1291 51.2
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1108.6 1218 52.5
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1102.8 1244 51.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1099.3 1241 52.2
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1085.5 1217 51.4
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1080.9 1238 51.7
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1080.1 1179 52.7
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 1.7e-311 1072.8 1215 52.0
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 1.1e-309 1067.0 1248 50.2
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 1.2e-308 1063.5 1255 51.8
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 4.7e-305 1051.6 1248 50.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 1.1e-301 1040.4 1263 48.4
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 8.5e-299 1030.8 1235 49.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 4.2e-298 1028.5 1229 48.9
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.1e-295 1020.4 1243 49.5
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 1.7e-291 1006.5 1182 50.3
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 1.7e-291 1006.5 1182 50.3
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 5.0e-291 1005.0 1187 49.7
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 8.5e-291 1004.2 1233 48.8
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 2.5e-290 1002.7 1203 48.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 2.7e-289 999.2 1187 49.2
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 2.3e-288 996.1 1237 48.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 6.7e-288 994.6 1188 49.3
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 8.8e-288 994.2 1254 47.4
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.5e-287 993.4 1209 48.9
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 2.7e-284 982.6 1175 49.2
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 2.0e-276 956.4 1203 48.7
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 2.9e-275 952.6 1201 48.5
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 2.9e-275 952.6 1271 46.5
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 3.0e-272 942.6 1072 50.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 3.7e-254 882.5 918 56.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 2.4e-253 879.8 1241 44.0
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 3.5e-252 875.9 1276 43.3
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 2.8e-249 866.3 759 63.0
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 8.1e-249 864.8 1230 44.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 4.6e-244 849.0 1080 47.4
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 6.6e-243 845.1 1262 42.9
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 6.9e-224 781.9 1219 40.7
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 7.6e-223 778.5 1239 40.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.0e-207 727.2 673 57.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 6.5e-182 642.5 1104 39.5
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 4.5e-167 593.2 430 68.4
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 3.1e-160 570.5 1237 35.2
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 9.8e-146 522.3 798 44.5
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.9e-121 440.3 1231 29.2
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.6e-119 433.7 1240 29.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 7.8e-119 433.0 504 52.8
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.9e-118 430.6 1170 29.7
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 9.6e-117 426.0 1237 29.9
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 9.6e-117 426.0 599 42.6
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.7e-113 415.2 681 43.6
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.4e-107 395.6 447 53.5
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 6.9e-107 393.3 1138 29.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 9.0e-107 392.9 432 54.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.6e-98 364.8 1163 28.8
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.3e-68 266.2 1237 25.1
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.8e-65 254.6 247 54.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 4.1e-59 234.6 1029 27.6
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 9.1e-59 233.4 218 62.4
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.0e-53 215.7 493 32.9
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.8e-52 211.8 493 32.5
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.0e-50 205.7 404 41.1
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.9e-42 177.6 352 35.8
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-40 173.3 339 38.1
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-30 139.0 121 61.2
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.5e-26 125.2 121 57.0
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 3.3e-24 118.6 105 54.3
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 7.3e-24 117.5 1067 21.6
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 5.8e-21 107.8 139 52.5
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 4.1e-19 101.7 192 40.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.6e-18 99.8 188 37.8
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.7e-18 99.0 468 23.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.3e-14 85.9 71 62.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 6.8e-14 84.3 63 65.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 6.8e-14 84.3 63 65.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 4.6e-10 71.6 91 48.4
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.0e-09 70.5 133 31.6
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.7e-09 69.7 112 41.1
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 9.6e-08 63.9 49 63.3
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.4e-06 60.1 53 47.2
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 4.0e-06 58.5 54 50.0


User provided reference genes

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