Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.5e-275 952.2 471 100.0
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.3e-252 875.2 531 84.6
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 8.6e-223 776.9 518 77.6
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.2e-221 773.1 518 77.2
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 3.4e-211 738.4 488 77.9
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 2.4e-193 679.1 429 79.7
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.0e-183 647.1 508 65.2
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 1.7e-178 629.8 501 63.7
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.9e-177 626.3 518 62.7
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 7.1e-177 624.4 502 63.9
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.7e-176 622.5 475 65.7
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 6.0e-176 621.3 507 62.3
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.0e-175 620.5 507 63.9
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.0e-175 619.0 492 64.4
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 6.7e-175 617.8 521 60.7
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.9e-174 616.3 510 62.9
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 5.6e-174 614.8 496 63.1
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 5.6e-174 614.8 473 64.5
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 7.4e-174 614.4 510 62.5
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.6e-173 613.2 515 61.2
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 3.7e-173 612.1 480 64.2
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 3.7e-173 612.1 491 62.9
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.1e-172 610.5 438 68.3
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 5.3e-172 608.2 517 59.2
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 5.3e-172 608.2 472 64.2
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.2e-171 607.1 469 65.0
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 2.2e-170 602.8 461 64.9
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 4.9e-170 601.7 471 62.6
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 6.5e-170 601.3 463 63.7
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 8.4e-170 600.9 515 58.8
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 4.2e-169 598.6 465 64.5
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.1e-169 597.8 517 58.8
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.2e-168 597.0 517 59.4
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 2.7e-168 595.9 464 63.6
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 2.7e-168 595.9 494 62.1
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 3.5e-168 595.5 490 61.6
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 3.5e-168 595.5 487 62.0
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 4.6e-168 595.1 508 60.0
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 7.9e-168 594.3 481 63.4
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.3e-167 593.6 509 60.1
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 1.8e-167 593.2 518 61.6
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 2.3e-167 592.8 460 63.0
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 5.1e-167 591.7 508 60.8
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 4.3e-166 588.6 491 60.1
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 9.7e-166 587.4 471 64.1
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.3e-165 587.0 471 64.1
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.6e-165 586.6 470 62.6
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 4.8e-165 585.1 470 63.8
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.4e-164 583.6 538 57.8
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 2.4e-164 582.8 516 59.9
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 9.0e-164 580.9 511 59.1
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 9.0e-164 580.9 463 62.6
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.0e-163 579.7 490 60.6
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.6e-163 579.3 473 62.6
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 2.6e-163 579.3 494 60.9
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 5.9e-163 578.2 485 59.0
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 7.7e-163 577.8 513 58.1
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 2.9e-162 575.9 460 61.5
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 1.1e-161 573.9 483 60.2
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.4e-161 573.5 493 59.8
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 1.9e-161 573.2 459 63.8
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 3.2e-161 572.4 459 63.6
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 7.2e-161 571.2 489 59.7
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.8e-159 566.6 515 58.6
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.1e-158 563.9 487 58.5
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.5e-158 563.5 475 60.4
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.9e-158 563.1 456 61.4
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 4.3e-158 562.0 467 60.8
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 5.7e-158 561.6 490 59.2
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.3e-157 560.5 496 58.5
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.3e-157 560.5 492 58.7
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.1e-156 555.8 513 56.7
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.6e-155 552.7 474 59.7
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.6e-155 552.7 463 59.2
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 5.9e-155 551.6 340 83.8
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 5.5e-153 545.0 528 55.9
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.4e-151 540.4 440 60.9
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 2.6e-150 536.2 519 54.9
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.4e-148 529.6 497 56.1
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.1e-145 520.8 487 55.9
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 8.0e-144 514.6 483 53.0
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 2.3e-143 513.1 416 62.5
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 5.2e-143 511.9 434 60.4
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 2.2e-141 506.5 414 63.0
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.7e-141 505.8 464 56.2
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 1.1e-140 504.2 475 54.9
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 7.2e-137 491.5 404 60.6
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.4e-135 487.3 471 55.2
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.4e-132 477.2 488 52.5
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 8.3e-117 424.9 458 49.1
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.1e-116 422.9 314 67.2
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 7.8e-115 418.3 462 47.0
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 1.0e-111 407.9 323 65.6
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.4e-111 407.5 368 59.5
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.2e-107 394.4 443 45.4
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 4.0e-95 352.8 327 58.1
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 7.5e-94 348.6 355 51.8
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 9.2e-92 341.7 464 42.9
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.3e-90 337.8 308 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.3e-90 337.0 399 46.4
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 5.2e-87 325.9 271 63.1
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 7.8e-83 312.0 223 67.7
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 3.9e-82 309.7 244 61.1
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 9.9e-78 295.0 226 64.6
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.1e-76 291.6 383 43.6
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 2.4e-76 290.4 260 59.6
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 1.0e-74 285.0 276 53.3
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.7e-64 250.0 356 43.5
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.2e-43 181.8 497 29.0
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 1.6e-43 181.4 126 62.7
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.8e-37 160.2 140 54.3
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.4e-26 125.2 78 76.9
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.2e-24 115.9 89 65.2
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 2.4e-23 114.4 94 58.5
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 1.2e-22 112.1 84 59.5
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 8.5e-21 105.9 446 27.1
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 9.8e-17 92.4 64 67.2
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.8e-15 88.2 75 56.0
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.1e-15 87.0 89 43.8
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 1.1e-12 79.0 95 45.3
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.1e-12 79.0 89 49.4
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.8e-08 64.3 370 22.4
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 6.3e-08 63.2 281 25.6
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 3.1e-07 60.8 37 64.9
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 3.5e-06 57.4 36 63.9


User provided reference genes

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