Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 0.0e+00 1118.2 564 100.0
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 3.7e-281 971.1 598 84.4
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-278 962.2 568 88.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 5.6e-277 957.2 584 84.6
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.8e-258 894.0 549 83.6
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.4e-251 872.8 594 75.9
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.5e-250 869.4 500 88.4
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.5e-250 869.4 586 76.5
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.4e-250 868.2 587 76.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 3.4e-250 868.2 588 75.3
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 3.8e-249 864.8 587 75.5
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.9e-248 862.4 588 76.0
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.4e-248 862.1 564 77.5
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.0e-247 857.4 588 74.3
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.0e-246 856.7 588 74.8
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.9e-246 854.7 587 74.3
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 8.6e-246 853.6 588 73.8
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 8.6e-246 853.6 588 74.7
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.3e-245 851.7 584 74.1
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 9.0e-243 843.6 588 73.6
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 3.4e-242 841.6 588 73.5
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 7.6e-242 840.5 587 72.6
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 7.6e-242 840.5 587 72.9
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 9.3e-240 833.6 589 72.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.2e-239 833.2 587 71.6
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 3.5e-239 831.6 589 72.7
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.0e-238 830.1 590 73.6
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.3e-238 828.9 588 71.9
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 8.7e-238 827.0 590 72.2
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.5e-237 826.2 585 72.5
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.9e-237 825.9 593 71.7
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 9.6e-237 823.5 587 72.2
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 9.6e-237 823.5 588 71.3
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-236 823.2 598 71.4
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 3.6e-236 821.6 587 72.2
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.2e-236 820.8 593 71.2
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.4e-235 819.7 587 72.1
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.8e-235 819.3 591 72.1
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.4e-235 818.9 584 71.9
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.5e-234 816.2 589 71.1
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 4.5e-234 814.7 584 72.4
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.7e-233 812.8 588 71.4
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 1.1e-232 810.1 597 69.7
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.1e-232 810.1 588 70.9
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.1e-232 807.4 588 70.4
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.6e-231 806.2 563 72.6
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.1e-231 805.8 561 75.4
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 2.7e-231 805.4 589 71.5
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.9e-229 799.3 587 69.8
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.9e-229 799.3 587 71.0
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.9e-229 799.3 588 71.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 7.4e-229 797.3 587 70.4
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.8e-228 794.7 500 83.4
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 4.0e-227 791.6 593 68.3
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 4.0e-227 791.6 586 71.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.5e-226 789.6 587 70.9
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.5e-226 789.6 587 69.5
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.0e-226 789.3 592 68.9
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 4.5e-226 788.1 584 69.3
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 7.6e-226 787.3 571 73.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 2.4e-224 782.3 587 69.7
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 5.5e-224 781.2 634 65.5
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 9.3e-224 780.4 587 69.8
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.2e-223 780.0 611 66.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.2e-223 780.0 586 69.1
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.3e-222 775.8 591 69.4
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.9e-222 775.0 589 68.9
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.9e-221 772.7 586 69.1
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.6e-220 769.6 587 69.0
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 6.2e-220 767.7 703 59.9
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.5e-218 763.1 526 73.8
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.0e-218 762.7 591 67.2
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 3.8e-217 758.4 584 68.3
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 4.9e-217 758.1 582 67.2
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 8.4e-217 757.3 591 67.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 4.2e-216 755.0 582 67.0
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.2e-215 753.4 560 67.9
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.6e-215 753.1 498 75.9
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.1e-215 752.7 585 66.2
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.8e-214 749.6 585 66.0
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 3.9e-214 748.4 587 65.8
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 3.9e-214 748.4 586 66.7
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.8e-211 739.6 569 68.5
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.2e-209 732.6 561 68.6
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.6e-207 726.5 543 69.8
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 3.6e-207 725.3 563 66.3
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.1e-205 720.3 600 64.7
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.1e-199 699.5 504 69.4
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.7e-197 690.6 572 64.2
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 5.3e-195 684.9 589 64.2
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 3.4e-194 682.2 481 73.0
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 4.5e-194 681.8 502 69.5
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 4.4e-189 665.2 548 62.2
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 9.1e-187 657.5 521 63.1
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 4.5e-186 655.2 478 69.9
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 4.5e-186 655.2 504 67.3
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.9e-185 652.5 547 61.4
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 7.2e-176 621.3 540 57.4
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.3e-172 608.2 496 62.9
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.4e-171 607.1 555 60.9
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.5e-170 602.4 544 57.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 2.5e-160 569.7 460 63.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 5.2e-158 562.0 587 55.4
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.3e-153 547.4 347 81.8
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 5.2e-150 535.4 520 53.7
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.4e-147 526.6 371 75.5
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 7.0e-147 525.0 493 59.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 7.8e-146 521.5 522 53.3
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 5.1e-137 492.3 322 78.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.3e-129 466.8 319 74.0
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 4.9e-124 449.1 309 75.7
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.9e-121 439.5 519 43.2
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.3e-120 435.3 245 89.4
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.2e-114 417.9 458 52.6
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 8.1e-111 405.2 388 59.3
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.7e-103 379.8 228 83.8
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 2.7e-98 363.6 259 72.6
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 9.0e-94 348.6 224 74.1
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 5.1e-89 332.8 219 73.1
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 4.8e-87 326.2 210 72.4
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.4e-86 323.9 184 88.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 3.1e-86 323.6 183 88.0
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.9e-85 319.3 212 70.8
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.1e-72 278.5 512 35.0
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.0e-60 236.5 134 79.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 7.0e-54 216.1 287 47.7
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 2.3e-49 201.1 177 61.0
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 3.0e-49 200.7 219 50.7
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 5.4e-46 189.9 496 29.6
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.5e-40 169.5 134 64.9
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 2.4e-38 164.5 112 68.8
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 2.4e-38 164.5 112 68.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.0e-37 161.4 123 69.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-36 158.7 156 56.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 9.5e-35 152.5 381 31.0
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.1e-26 122.9 81 72.8
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 3.4e-24 117.5 147 48.3
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.2e-23 114.8 66 86.4
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 7.1e-22 109.8 66 81.8
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 7.1e-22 109.8 68 83.8
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 7.8e-21 106.3 84 63.1
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 3.9e-20 104.0 137 43.8
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 8.6e-20 102.8 52 94.2
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.5e-19 101.3 117 47.9
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 8.9e-17 92.8 57 80.7
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.5e-16 92.0 102 52.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.7e-15 88.6 86 54.7
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.2e-14 84.3 152 36.8
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.6e-12 76.6 65 63.1
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.3e-10 72.4 46 73.9
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 2.8e-10 71.2 61 59.0
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.3e-09 67.0 55 58.2
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.7e-07 62.0 72 45.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 3.8e-07 60.8 43 67.4
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 4.9e-07 60.5 77 40.3
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 2.4e-06 58.2 38 71.1


User provided reference genes

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