Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 0.0e+00 1114.8 566 100.0
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-311 1072.4 580 95.2
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.4e-267 926.0 566 85.3
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.3e-267 925.2 566 85.0
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.0e-267 924.5 566 85.3
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.8e-259 899.0 552 83.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 7.6e-258 893.6 565 81.8
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.8e-220 768.8 520 75.4
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.7e-220 768.5 540 73.0
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 8.2e-220 767.3 520 74.0
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 8.2e-220 767.3 563 70.0
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 5.3e-219 764.6 540 72.8
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 4.5e-218 761.5 516 73.1
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.3e-217 760.0 520 74.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.3e-217 760.0 565 69.6
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.1e-216 756.9 520 73.8
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.6e-215 753.1 572 70.1
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 4.6e-215 751.5 568 69.5
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 8.8e-214 747.3 522 73.4
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.5e-213 746.5 510 72.9
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 1.5e-213 746.5 554 70.0
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 2.5e-213 745.7 512 73.2
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 5.7e-213 744.6 561 68.3
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.2e-212 742.7 562 67.4
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 3.7e-212 741.9 547 69.5
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.1e-211 740.3 570 67.2
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.1e-211 738.8 566 67.7
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.6e-210 735.7 541 68.9
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.6e-210 735.7 564 66.1
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 2.6e-210 735.7 497 73.4
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.4e-210 735.3 562 68.1
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 4.5e-210 734.9 539 70.1
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 1.3e-209 733.4 534 69.5
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.3e-209 733.4 563 68.0
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.9e-209 732.3 541 68.0
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.9e-209 732.3 565 68.3
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 3.8e-209 731.9 541 68.6
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 8.5e-209 730.7 543 68.9
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.5e-208 728.0 493 74.4
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 5.5e-208 728.0 557 66.1
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 7.2e-208 727.6 560 67.5
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 9.4e-208 727.2 517 70.2
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 6.1e-207 724.5 444 78.4
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.8e-206 723.0 525 69.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.3e-206 722.6 524 69.5
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 5.1e-206 721.5 512 71.7
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 6.7e-206 721.1 519 70.3
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 1.5e-205 719.9 529 67.7
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.0e-205 719.5 525 69.1
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 3.3e-205 718.8 563 65.0
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 7.4e-205 717.6 520 68.8
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 7.4e-205 717.6 555 66.8
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.8e-204 715.7 559 66.4
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.1e-203 713.8 537 68.0
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.1e-203 713.8 563 64.7
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.1e-203 713.8 530 68.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.8e-203 713.0 522 70.3
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.8e-203 713.0 531 68.2
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 4.1e-203 711.8 536 67.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 4.1e-203 711.8 529 68.1
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 7.0e-203 711.1 535 67.7
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.6e-202 709.9 569 65.2
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.6e-202 709.1 573 66.1
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 4.5e-202 708.4 521 68.7
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 5.9e-202 708.0 518 69.5
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.9e-201 705.7 512 69.5
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 2.9e-201 705.7 512 68.8
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.0e-201 704.9 560 64.3
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 5.0e-201 704.9 558 67.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 6.5e-201 704.5 512 68.8
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 6.5e-201 704.5 510 69.0
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 8.5e-201 704.1 493 70.8
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 8.5e-201 704.1 565 65.5
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.5e-200 702.6 512 68.6
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 3.2e-200 702.2 559 66.7
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 4.2e-200 701.8 497 71.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 5.5e-200 701.4 545 67.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.6e-199 699.9 534 66.9
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 3.6e-199 698.7 539 65.7
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.0e-198 697.2 583 63.6
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.4e-198 696.8 517 68.7
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.5e-197 693.3 549 65.9
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.3e-197 692.2 523 69.0
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.4e-197 691.8 535 66.4
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.8e-196 689.1 525 67.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 6.3e-196 688.0 564 63.3
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.3e-193 680.2 518 67.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.9e-193 679.1 508 66.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 1.5e-192 676.8 485 68.5
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.2e-192 674.5 583 62.3
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.4e-190 670.2 429 74.8
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.4e-190 670.2 478 70.3
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.3e-190 669.5 460 71.5
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 6.8e-190 667.9 523 66.3
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.3e-188 663.7 613 58.7
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.8e-188 662.5 499 67.9
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 2.3e-174 616.3 519 63.6
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.3e-169 599.7 375 78.1
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 8.6e-169 597.8 522 58.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.0e-166 590.9 429 68.8
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.1e-151 540.0 383 73.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 5.4e-147 525.4 516 53.9
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.9e-144 516.9 516 53.3
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.6e-143 512.7 408 65.2
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 2.1e-138 496.9 438 57.3
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.0e-137 493.0 395 65.3
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 6.0e-130 468.8 574 50.7
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 3.6e-127 459.5 512 49.2
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 9.9e-125 451.4 519 52.8
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.2e-123 446.0 586 49.5
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.8e-121 440.7 573 48.9
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.1e-118 431.4 573 48.0
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.0e-116 424.9 572 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 3.8e-108 396.4 492 45.3
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 5.0e-108 396.0 510 48.0
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.3e-104 383.3 242 77.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.0e-101 374.0 562 41.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.1e-96 358.2 476 43.7
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.1e-75 288.5 481 38.7
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 7.7e-69 265.8 177 74.0
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.7e-61 240.7 169 69.8
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 3.4e-48 197.2 232 54.7
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.2e-45 188.7 160 61.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.4e-38 163.3 134 68.7
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.0e-36 159.1 139 60.4
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 3.3e-35 154.1 134 64.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.1e-34 149.4 131 57.3
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 8.4e-31 139.4 82 80.5
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.1e-27 129.0 105 60.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 9.9e-24 115.9 125 45.6
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.5e-19 102.1 104 53.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.4e-16 90.9 58 72.4
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 5.1e-12 77.0 99 48.5
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 1.1e-09 69.3 70 55.7
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 9.9e-08 62.8 149 38.9
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.3e-07 62.4 38 76.3
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 8.4e-07 59.7 133 42.1
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 5.5e-06 57.0 37 73.0


User provided reference genes

Program Settings