Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.5e-55 218.0 108 100.0
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 5.0e-25 117.9 100 66.0
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 6.5e-25 117.5 100 65.0
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 3.6e-23 111.7 86 68.6
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.2e-17 92.4 107 48.6
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 2.5e-16 89.0 68 63.2
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 6.1e-15 84.3 68 66.2
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 2.3e-14 82.4 105 45.7
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.0e-14 82.0 97 47.4
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 2.0e-13 79.3 96 54.2
COL.COLO4_31669 Corchorus olitorius HOM05D007156 ORTHO05D014783 1.6e-10 69.7 102 39.2
PGR004G0170 Punica granatum HOM05D012748 ORTHO05D014783 1.6e-10 69.7 101 39.6
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 1.7e-09 66.2 101 38.6
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 5.0e-09 64.7 85 49.4
Manes.17G030800 Manihot esculenta HOM05D012748 ORTHO05D014783 5.0e-09 64.7 99 44.4
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.0e-09 64.7 40 70.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 6.5e-09 64.3 64 46.9
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.9e-08 62.8 90 40.0
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.9e-08 62.8 81 40.7
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.9e-08 62.8 41 68.3
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 2.5e-08 62.4 111 39.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.5e-08 62.4 77 41.6
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 2.5e-08 62.4 90 44.4
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 4.2e-08 61.6 38 68.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 4.2e-08 61.6 40 70.0
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 4.2e-08 61.6 40 70.0
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 4.2e-08 61.6 46 54.3
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.2e-08 61.6 36 69.4
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.5e-08 61.2 44 52.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 5.5e-08 61.2 68 44.1
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 5.5e-08 61.2 36 69.4
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.2e-08 60.8 36 72.2
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.2e-08 60.8 36 72.2
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 7.2e-08 60.8 39 61.5
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 9.4e-08 60.5 76 44.7
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 9.4e-08 60.5 81 39.5
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 9.4e-08 60.5 36 69.4
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 9.4e-08 60.5 36 66.7
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 9.4e-08 60.5 36 69.4
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 1.2e-07 60.1 46 58.7
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.2e-07 60.1 58 46.6
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.2e-07 60.1 110 33.6
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.2e-07 60.1 41 53.7
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 1.2e-07 60.1 69 50.7
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 1.6e-07 59.7 74 51.4
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 1.6e-07 59.7 47 55.3
Eucgr.D00879 Eucalyptus grandis HOM05D012748 ORTHO05D014783 1.6e-07 59.7 70 44.3
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.1e-07 59.3 76 40.8
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 2.1e-07 59.3 37 67.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.1e-07 59.3 36 66.7
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 2.1e-07 59.3 38 63.2
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 2.1e-07 59.3 37 64.9
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.7e-07 58.9 40 60.0
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 2.7e-07 58.9 40 65.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.6e-07 58.5 36 66.7
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.6e-07 58.5 64 45.3
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 3.6e-07 58.5 41 56.1
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.6e-07 58.5 112 34.8
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.6e-07 58.5 40 60.0
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 3.6e-07 58.5 39 61.5
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.7e-07 58.2 41 61.0
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.7e-07 58.2 68 45.6
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 4.7e-07 58.2 38 63.2
Actinidia24046 Actinidia chinensis HOM05D001601 ORTHO05D006936 6.1e-07 57.8 59 50.8
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.1e-07 57.8 108 42.6
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 6.1e-07 57.8 36 66.7
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 6.1e-07 57.8 38 65.8
Oeu050577.1 Olea europaea HOM05D012748 ORTHO05D003871 6.1e-07 57.8 104 35.6
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 6.1e-07 57.8 41 53.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 6.1e-07 57.8 37 62.2
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 6.1e-07 57.8 39 59.0
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 6.1e-07 57.8 46 52.2
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.1e-07 57.8 69 44.9
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 6.1e-07 57.8 70 42.9
Ah.14g088550 Amaranthus hybridus HOM05D012748 ORTHO05D014783 8.0e-07 57.4 73 42.5
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 8.0e-07 57.4 102 37.3
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 8.0e-07 57.4 38 60.5
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 8.0e-07 57.4 39 56.4
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 8.0e-07 57.4 44 52.3
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 8.0e-07 57.4 37 62.2
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.0e-06 57.0 36 72.2
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 1.0e-06 57.0 42 52.4
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.0e-06 57.0 59 47.5
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-06 57.0 36 63.9
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-06 57.0 36 63.9
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-06 57.0 36 63.9
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.4e-06 56.6 42 52.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.4e-06 56.6 42 52.4
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 1.8e-06 56.2 37 62.2
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.8e-06 56.2 102 37.3
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 1.8e-06 56.2 69 39.1
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.8e-06 56.2 67 40.3
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.8e-06 56.2 36 66.7
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.8e-06 56.2 93 37.6
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.8e-06 56.2 36 63.9
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.3e-06 55.8 38 63.2
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 3.0e-06 55.5 36 63.9
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 3.0e-06 55.5 38 57.9
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 3.0e-06 55.5 35 65.7
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 3.0e-06 55.5 36 63.9
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 3.0e-06 55.5 66 43.9
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 3.0e-06 55.5 100 39.0
HPP92_022326 Vanilla planifolia HOM05D066303 ORTHO05D051580 3.0e-06 55.5 34 67.6
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.0e-06 55.1 81 39.5
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 4.0e-06 55.1 37 59.5
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 4.0e-06 55.1 37 59.5
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 4.0e-06 55.1 105 37.1
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 4.0e-06 55.1 105 37.1
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 4.0e-06 55.1 39 53.8
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 5.2e-06 54.7 71 39.4
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 5.2e-06 54.7 69 43.5
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 5.2e-06 54.7 36 58.3
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 6.7e-06 54.3 36 63.9
Rhsim02G0116800 Rhododendron simsii HOM05D007156 ORTHO05D003871 6.7e-06 54.3 51 58.8
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 6.7e-06 54.3 96 35.4
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.7e-06 54.3 41 58.5
EL10As6g23655 Beta vulgaris HOM05D012748 ORTHO05D014783 8.8e-06 53.9 97 37.1
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 8.8e-06 53.9 65 41.5
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 8.8e-06 53.9 36 63.9
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 8.8e-06 53.9 109 33.9


User provided reference genes

Program Settings