Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1293.5 640 100.0
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1147.5 611 94.4
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 3.2e-273 944.9 517 93.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.7e-271 937.2 517 92.8
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 2.1e-264 915.6 505 92.7
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 6.4e-205 718.0 518 71.8
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 2.6e-198 696.0 521 70.1
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 1.1e-196 690.6 520 70.2
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 5.5e-196 688.3 521 69.5
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 2.5e-193 679.5 574 63.9
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 2.1e-192 676.4 521 67.6
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 7.6e-190 667.9 520 68.8
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 1.3e-189 667.2 517 68.7
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 8.4e-189 664.5 514 68.9
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 1.4e-188 663.7 525 66.5
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.6e-187 660.2 520 66.2
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 1.8e-183 646.7 562 63.2
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 2.4e-183 646.4 522 66.3
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 1.2e-182 644.0 552 63.6
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 2.6e-182 642.9 556 63.1
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 4.6e-179 632.1 523 65.2
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.8e-178 630.2 525 64.0
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 2.3e-178 629.8 525 63.6
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 3.0e-178 629.4 516 65.3
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 4.3e-177 625.5 547 62.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 9.7e-177 624.4 523 63.5
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 8.2e-176 621.3 522 63.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.8e-175 620.2 517 63.8
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 2.4e-175 619.8 512 62.1
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 4.1e-175 619.0 511 64.6
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 4.1e-175 619.0 521 63.1
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 3.4e-174 615.9 522 63.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 5.9e-174 615.1 522 64.8
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 1.7e-173 613.6 519 63.2
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.9e-173 612.8 521 62.6
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 6.5e-173 611.7 522 62.5
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 8.5e-173 611.3 518 63.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 1.4e-172 610.5 516 63.0
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 3.2e-172 609.4 527 61.9
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 3.2e-172 609.4 522 62.6
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 1.2e-171 607.4 511 63.2
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.1e-171 606.7 522 62.1
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 2.1e-171 606.7 581 57.3
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 3.6e-171 605.9 519 62.6
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 1.4e-170 604.0 519 62.6
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 3.0e-170 602.8 522 61.9
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 7.4e-169 598.2 522 61.1
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 1.7e-168 597.0 518 62.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 2.2e-168 596.7 526 61.0
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 2.8e-168 596.3 518 62.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 8.2e-168 594.7 522 60.3
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.4e-167 594.0 520 62.1
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 1.8e-167 593.6 522 60.7
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 2.4e-167 593.2 520 62.1
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 7.0e-167 591.7 518 62.4
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 2.0e-166 590.1 516 62.6
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 2.6e-166 589.7 523 60.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-166 589.7 522 59.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 5.9e-166 588.6 518 61.8
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-165 587.8 522 59.6
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 2.2e-165 586.6 524 60.3
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 2.2e-165 586.6 523 60.8
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.9e-165 586.3 522 59.6
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 2.9e-165 586.3 523 60.6
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 5.0e-165 585.5 534 59.6
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 6.5e-165 585.1 518 62.0
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 6.5e-165 585.1 524 60.7
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 1.1e-164 584.3 512 62.7
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 1.1e-164 584.3 512 62.7
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 1.9e-164 583.6 520 60.4
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 4.2e-164 582.4 511 61.6
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 9.4e-164 581.3 512 60.9
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 1.6e-163 580.5 518 61.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 1.6e-163 580.5 518 61.2
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 2.1e-163 580.1 514 61.3
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 2.7e-163 579.7 521 59.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 8.0e-163 578.2 520 60.8
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 1.0e-162 577.8 520 61.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 1.0e-162 577.8 520 60.8
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 1.0e-162 577.8 520 61.2
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 1.0e-162 577.8 515 59.8
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-162 576.2 522 58.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 6.7e-162 575.1 522 58.4
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.3e-161 572.8 522 58.2
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 4.4e-161 572.4 526 60.1
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 1.7e-160 570.5 534 58.1
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 6.3e-160 568.5 523 60.0
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.2e-160 568.2 522 57.9
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 2.2e-157 560.1 527 57.7
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 3.8e-157 559.3 518 59.7
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 5.0e-157 558.9 537 58.7
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.1e-156 557.8 520 59.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.1e-156 557.8 517 58.8
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 3.6e-155 552.7 508 59.4
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 2.3e-154 550.1 518 58.9
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-154 550.1 525 57.5
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 4.4e-153 545.8 531 56.5
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 5.7e-153 545.4 519 57.6
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 6.3e-152 542.0 526 57.0
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 8.3e-152 541.6 511 56.8
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.2e-150 537.7 517 57.3
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 2.7e-150 536.6 526 56.8
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 3.5e-150 536.2 528 55.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.5e-148 530.8 505 57.6
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.4e-146 524.2 521 57.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.0e-146 522.7 520 54.6
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 6.8e-146 521.9 533 55.5
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.5e-132 477.6 515 51.3
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.3e-132 476.1 536 49.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 2.0e-121 440.7 522 48.3
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 4.4e-121 439.5 517 48.0
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 8.7e-101 372.1 543 43.1
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 4.3e-100 369.8 342 59.1
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 2.0e-97 360.9 523 45.9
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-79 301.6 547 36.9
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.5e-76 291.6 538 35.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 9.6e-76 288.9 532 36.1
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-75 288.1 379 46.4
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 5.0e-72 276.6 520 36.5
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.1e-68 265.4 208 65.4
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.1e-66 256.9 513 34.1
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 8.2e-59 232.6 209 57.4
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.4e-53 215.3 197 63.5
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.3e-51 208.8 168 70.8
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 3.8e-48 197.2 596 28.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.3e-45 188.0 130 74.6
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-43 182.2 212 49.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-43 181.4 256 44.9
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-42 179.1 208 50.0
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-42 177.9 208 49.5
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.5e-31 140.2 134 53.0
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.5e-31 140.2 129 55.0
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 8.0e-30 136.3 129 54.3
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 8.0e-30 136.3 143 49.0
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.4e-26 124.8 134 48.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-24 119.0 181 45.9
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-24 118.6 124 51.6
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.6e-24 116.3 92 60.9
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-22 111.3 111 51.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 3.0e-21 107.8 70 74.3
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 6.6e-16 90.1 57 80.7
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.6e-15 87.0 70 64.3
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 8.9e-13 79.7 242 29.8
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 4.6e-09 67.4 134 38.1


User provided reference genes

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