Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1934.1 973 100.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1746.9 957 93.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1738.4 969 90.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1736.9 998 89.1
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1732.2 969 90.0
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1705.6 969 89.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1475.3 985 75.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1463.4 987 76.4
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1448.3 979 75.7
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1438.3 980 75.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1437.9 987 74.9
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1437.9 983 75.3
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1437.2 989 74.1
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1436.8 985 74.2
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1434.1 984 74.1
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1431.0 972 76.2
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 980 74.6
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 975 75.7
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 986 74.1
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 984 73.9
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1422.5 984 73.3
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 998 73.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 980 74.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 985 72.8
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 977 74.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 984 73.1
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1414.1 979 74.2
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1413.3 984 72.9
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1412.5 971 74.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1407.1 982 72.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1404.8 971 74.4
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1399.4 981 73.1
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1009 70.9
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1397.5 966 73.7
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 988 72.1
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1393.3 1009 70.6
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1390.6 1002 71.1
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 1020 69.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1385.9 987 71.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 977 73.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 975 72.5
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1379.0 929 77.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1369.4 988 72.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1368.2 997 71.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1367.4 1008 69.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1367.1 982 71.1
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1365.1 979 70.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1365.1 1001 69.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1364.4 1032 68.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1362.8 984 71.4
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 994 70.8
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1361.7 984 70.0
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1360.1 998 70.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1360.1 981 70.9
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1359.4 979 71.1
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 960 74.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1357.4 998 70.4
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1354.3 985 71.4
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 980 71.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1347.4 982 70.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1343.9 903 76.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 966 71.3
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1340.1 973 70.7
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 981 69.5
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1337.4 980 69.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1335.5 981 69.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1334.3 980 69.1
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1333.5 985 70.8
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1333.2 980 69.2
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1332.0 981 69.5
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 980 69.0
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1329.3 980 69.0
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 980 68.7
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1322.0 983 68.9
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 991 68.4
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 987 68.4
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1317.0 973 71.1
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1315.4 997 68.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1314.7 974 68.1
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1313.9 1001 68.5
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1307.7 989 69.0
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1295.8 987 67.8
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1292.7 994 67.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1292.7 1058 65.2
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1281.5 942 70.0
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1275.8 989 65.9
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 988 67.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 976 67.7
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1268.8 987 66.6
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1264.6 989 65.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 1076 62.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 969 67.6
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1246.1 938 69.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1241.5 951 67.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 978 66.4
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1235.3 977 66.3
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1231.9 971 66.7
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1231.5 975 66.1
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 991 64.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1229.9 978 65.7
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1215.7 1004 64.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1209.1 1004 63.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1207.2 978 64.6
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 971 65.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 1003 63.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1191.4 1016 61.7
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1180.2 1114 56.6
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1174.8 835 72.7
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1157.5 1147 54.7
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1157.1 970 64.6
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1151.7 971 61.9
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1132.9 892 66.9
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1122.1 988 59.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1120.5 871 68.7
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1116.3 987 60.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1114.4 986 58.8
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1094.3 991 59.2
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 2.4e-304 1048.9 898 60.0
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 6.2e-300 1034.2 786 68.6
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.9e-297 1025.4 835 65.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.7e-294 1016.1 582 89.5
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.1e-291 1005.4 932 59.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.9e-264 916.4 753 65.9
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 3.8e-257 892.1 1021 49.9
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.2e-256 889.0 846 57.2
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.7e-252 875.5 1020 48.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.1e-245 854.0 975 48.8
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.9e-240 836.6 602 72.4
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-227 794.3 598 68.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.3e-219 765.4 883 48.6
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.2e-216 755.7 890 47.2
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 6.1e-215 751.9 625 63.7
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.4e-213 746.1 870 45.7
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.7e-207 725.7 1048 43.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-177 627.5 360 85.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 6.4e-172 609.0 392 78.3
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.4e-163 581.3 378 78.6
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.5e-149 533.1 559 53.7
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.9e-140 503.8 441 64.4
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 4.6e-138 496.5 462 61.9
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 9.0e-134 482.3 527 52.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.7e-101 374.4 266 72.6
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.2e-95 354.8 238 77.7
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.8e-95 354.4 179 89.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.6e-90 337.4 270 67.4
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 8.3e-79 299.7 240 64.2
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 5.4e-78 297.0 216 73.1
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.7e-77 294.7 162 83.3
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 6.0e-77 293.5 832 29.8
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 8.0e-74 283.1 150 86.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.6e-60 236.9 174 63.2
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-53 215.3 278 50.7
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.6e-50 205.7 193 63.2
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 4.7e-50 204.1 114 78.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.1e-49 203.0 287 47.7
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 5.8e-48 197.2 881 25.5
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 4.5e-40 171.0 145 57.2
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.0e-32 145.6 77 84.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 4.5e-32 144.4 114 67.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.9e-31 141.7 90 73.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.2e-30 138.3 79 74.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 7.9e-29 133.7 155 52.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 4.5e-24 117.9 101 65.3
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 9.3e-22 110.2 91 62.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.2e-15 89.0 102 52.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 5.5e-14 84.3 65 56.9
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-13 82.4 96 49.0
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.0e-12 80.1 57 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.9e-12 78.2 50 74.0
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.8e-10 71.2 74 44.6
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.8e-10 71.2 74 44.6
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.4e-09 69.7 56 53.6
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 5.0e-07 61.2 72 52.8


User provided reference genes

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