Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.3e-115 418.3 198 100.0
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 8.3e-111 403.7 190 100.0
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 9.5e-107 390.2 190 96.8
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.3e-105 385.6 190 95.8
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 2.3e-105 385.6 190 95.8
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.3e-105 385.6 190 95.8
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.4e-102 376.3 190 93.2
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 6.0e-101 370.9 190 93.7
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 6.0e-101 370.9 190 92.6
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.5e-99 366.3 190 91.6
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.9e-99 365.9 190 91.1
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 5.6e-99 364.4 190 91.1
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 7.3e-99 364.0 190 90.5
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 7.3e-99 364.0 190 90.5
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 7.3e-99 364.0 190 91.6
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 9.5e-99 363.6 189 92.1
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 9.5e-99 363.6 190 91.1
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 2.1e-98 362.5 190 91.1
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 2.1e-98 362.5 191 90.6
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.6e-98 361.7 190 90.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 3.6e-98 361.7 190 90.0
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 4.7e-98 361.3 190 88.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.2e-98 360.9 191 88.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 6.2e-98 360.9 190 89.5
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.1e-97 360.1 192 88.0
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-97 359.8 190 90.0
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 1.4e-97 359.8 190 89.5
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.4e-97 359.8 190 90.0
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.4e-97 359.8 190 90.0
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.8e-97 359.4 190 89.5
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 2.3e-97 359.0 190 88.9
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.3e-97 359.0 194 89.7
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 3.1e-97 358.6 190 89.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 4.0e-97 358.2 190 89.5
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 4.0e-97 358.2 194 88.7
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 8.9e-97 357.1 190 89.5
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.2e-96 356.7 190 88.4
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.5e-96 356.3 190 87.9
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.5e-96 356.3 190 88.4
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.6e-96 355.5 190 89.5
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 3.4e-96 355.1 190 89.5
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 5.8e-96 354.4 206 84.0
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 9.9e-96 353.6 190 87.4
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 9.9e-96 353.6 213 81.7
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 1.7e-95 352.8 189 88.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.7e-95 352.8 190 87.9
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.7e-95 352.8 190 86.8
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 3.7e-95 351.7 191 87.4
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.4e-95 350.9 190 86.8
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 6.4e-95 350.9 189 86.8
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.1e-94 350.1 191 85.9
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.4e-94 349.7 190 88.4
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.4e-94 349.7 190 86.3
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 4.1e-94 348.2 191 85.3
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 7.1e-94 347.4 190 86.8
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 7.1e-94 347.4 190 87.9
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.2e-93 346.7 190 87.4
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.2e-93 346.7 195 85.1
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.2e-93 346.7 190 85.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.1e-93 345.9 223 76.7
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 3.5e-93 345.1 199 83.9
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 4.6e-93 344.7 191 85.9
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 4.6e-93 344.7 190 85.3
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 7.8e-93 344.0 190 86.8
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.3e-92 343.2 192 84.9
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 1.7e-92 342.8 190 85.3
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.3e-92 342.4 190 86.3
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 3.0e-92 342.0 191 84.8
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 3.0e-92 342.0 191 84.8
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.9e-91 339.3 190 83.2
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.5e-91 339.0 160 96.9
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 2.5e-91 339.0 174 89.1
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.6e-90 336.3 190 84.2
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.8e-90 335.5 174 89.7
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.7e-90 334.7 174 89.1
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 4.7e-90 334.7 192 80.2
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 8.1e-90 334.0 190 82.1
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.4e-89 333.2 190 84.2
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.8e-89 332.8 189 83.1
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 4.0e-89 331.6 191 81.7
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 4.0e-89 331.6 191 81.7
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 6.8e-89 330.9 216 77.3
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 6.8e-89 330.9 191 81.7
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 8.9e-89 330.5 191 81.2
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.2e-88 330.1 191 81.2
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.5e-88 329.7 193 77.7
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 3.4e-88 328.6 191 81.2
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.4e-88 328.6 191 81.2
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 4.4e-88 328.2 191 80.6
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 4.4e-88 328.2 191 80.6
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 4.4e-88 328.2 191 80.6
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 7.6e-88 327.4 191 80.6
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 3.8e-87 325.1 191 80.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.4e-86 323.2 193 75.6
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 4.2e-86 321.6 192 79.7
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 4.2e-86 321.6 160 92.5
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 7.1e-86 320.9 159 92.5
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 6.0e-85 317.8 155 93.5
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.9e-84 315.1 173 82.7
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 8.7e-84 313.9 192 78.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.1e-78 294.3 170 75.9
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.5e-77 292.0 169 75.7
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 6.2e-74 281.2 170 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.7e-71 273.1 170 71.2
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 3.3e-67 258.8 173 67.1
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.2e-63 246.1 144 80.6
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.2e-63 246.1 144 80.6
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 2.9e-63 245.7 119 93.3
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 6.0e-61 238.0 119 88.2
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 5.1e-60 235.0 119 90.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 2.4e-57 226.1 107 94.4
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.0e-57 224.2 126 85.7
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 5.9e-56 221.5 143 74.8
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 3.2e-54 215.7 107 89.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 3.0e-52 209.1 107 86.9
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.0e-48 196.4 104 82.7
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.2e-46 188.7 107 86.0
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 2.4e-41 172.9 89 91.0
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 3.5e-32 142.5 87 81.6
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.7e-31 140.2 83 83.1
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.1e-27 127.5 67 88.1
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 7.0e-25 118.2 199 34.7
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 5.4e-17 92.0 175 33.1
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 5.0e-15 85.5 40 95.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 6.5e-15 85.1 63 66.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 4.0e-12 75.9 64 60.9
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.5e-08 62.8 41 65.9


User provided reference genes

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