Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.3e-303 1044.3 540 100.0
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 8.6e-211 737.3 533 76.9
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 2.7e-204 715.7 502 76.7
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 8.7e-203 710.7 502 76.1
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 1.2e-196 690.3 502 73.9
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.0e-192 674.1 474 74.7
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.5e-191 673.3 474 73.8
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 6.0e-188 661.4 500 70.4
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.4e-184 650.2 502 69.1
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.3e-182 643.7 502 68.9
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.9e-178 629.8 502 66.7
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 3.3e-178 629.0 526 67.1
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.4e-176 623.6 503 66.6
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.7e-174 616.7 503 65.0
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.2e-174 616.3 503 66.4
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 4.6e-172 608.6 503 65.6
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 4.3e-170 602.1 567 59.3
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.2e-167 594.0 504 64.7
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.5e-167 593.6 503 63.6
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 1.3e-166 590.5 502 62.5
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 9.4e-165 584.3 504 60.7
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 2.3e-163 579.7 503 61.4
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.1e-162 577.4 503 61.4
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.1e-162 577.4 503 61.2
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 2.6e-162 576.2 503 60.8
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 3.3e-162 575.9 507 61.1
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 5.7e-162 575.1 503 60.8
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 5.7e-162 575.1 504 60.9
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.7e-162 575.1 504 60.5
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.4e-162 574.7 504 60.9
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 9.7e-162 574.3 523 59.7
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.3e-161 573.9 503 61.2
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 8.2e-161 571.2 503 60.8
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 5.3e-160 568.5 503 60.8
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 6.9e-160 568.2 502 59.8
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.2e-159 567.4 503 60.8
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 3.4e-159 565.8 503 60.0
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 4.5e-159 565.5 508 59.8
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 3.8e-158 562.4 503 60.4
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 5.0e-158 562.0 503 59.6
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 5.0e-158 562.0 502 59.4
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.9e-157 560.1 503 59.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.9e-157 560.1 481 61.7
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.5e-157 559.7 502 59.2
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.2e-157 559.3 503 60.0
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.5e-157 558.5 503 59.0
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.5e-157 558.5 503 59.0
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 7.2e-157 558.1 502 58.8
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 9.4e-157 557.8 503 59.8
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 2.7e-156 556.2 503 58.6
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 3.6e-156 555.8 503 58.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.6e-156 555.8 503 59.0
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.7e-156 555.4 502 59.8
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 6.1e-156 555.1 503 59.0
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 8.0e-156 554.7 503 58.6
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.8e-155 553.5 522 58.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.8e-155 553.5 514 58.2
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 3.9e-155 552.4 503 59.2
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 8.8e-155 551.2 509 58.3
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.0e-154 550.1 503 57.9
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.0e-154 550.1 503 58.3
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 3.3e-154 549.3 507 59.2
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 7.4e-154 548.1 503 58.3
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.7e-153 547.0 503 58.4
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.7e-153 547.0 503 58.6
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 4.8e-153 545.4 503 58.8
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.3e-153 545.0 503 58.6
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 8.2e-153 544.7 503 58.8
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.1e-152 544.3 569 55.2
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.8e-152 543.5 502 57.8
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-152 543.1 516 57.6
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 3.1e-152 542.7 503 57.9
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 5.3e-152 542.0 516 57.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 5.3e-152 542.0 503 58.1
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 5.3e-152 542.0 502 58.4
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 5.3e-152 542.0 503 58.6
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 7.0e-152 541.6 503 57.3
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.5e-151 539.3 503 57.9
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.5e-151 538.9 503 58.8
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 4.5e-151 538.9 503 57.3
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.3e-150 537.3 503 57.3
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.7e-150 537.0 505 57.6
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.7e-150 537.0 503 57.3
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 6.5e-150 535.0 503 57.1
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 1.1e-149 534.3 475 58.5
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 7.2e-149 531.6 475 59.6
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 2.1e-148 530.0 596 51.2
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 4.7e-148 528.9 614 50.5
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 2.3e-147 526.6 567 52.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.3e-147 526.6 503 56.1
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.0e-147 525.8 503 57.7
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-146 524.2 536 54.9
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.5e-146 523.9 503 57.3
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 2.4e-144 516.5 503 56.3
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 7.0e-144 515.0 504 55.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.9e-143 511.9 499 55.7
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 7.7e-143 511.5 522 54.0
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 1.7e-142 510.4 503 54.5
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.7e-142 510.4 503 55.7
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.2e-142 510.0 503 54.7
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 2.9e-142 509.6 504 55.6
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.8e-142 509.2 503 54.1
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 6.5e-142 508.4 503 54.1
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 2.5e-141 506.5 567 50.1
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 7.2e-141 505.0 503 56.5
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 7.2e-141 505.0 503 54.1
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.2e-140 504.2 503 54.3
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 4.7e-140 502.3 502 54.8
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 8.0e-140 501.5 425 63.5
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.0e-139 501.1 503 54.3
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 3.0e-139 499.6 503 53.5
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 4.0e-139 499.2 503 53.1
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.2e-138 497.7 491 54.0
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.0e-138 496.9 482 55.4
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.6e-138 496.5 503 53.7
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 3.4e-138 496.1 502 53.0
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 5.7e-138 495.4 515 52.6
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 7.5e-138 495.0 498 52.8
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 2.2e-137 493.4 501 53.5
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 6.3e-137 491.9 541 51.2
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-136 490.7 499 53.3
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.4e-136 490.0 503 53.7
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 3.1e-136 489.6 434 60.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 7.0e-136 488.4 499 52.9
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.2e-135 487.6 503 52.7
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-135 487.3 542 51.1
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.9e-134 483.0 503 52.9
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.3e-133 479.6 503 51.7
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.5e-130 470.7 503 51.5
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 3.7e-129 466.1 538 50.2
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 6.3e-129 465.3 508 51.8
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 9.2e-128 461.5 518 51.2
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 9.2e-128 461.5 518 51.2
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-120 437.6 532 47.7
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 4.1e-120 436.0 504 50.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 1.6e-119 434.1 523 48.6
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 2.3e-118 430.3 502 50.4
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.1e-115 421.4 527 46.7
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.1e-112 411.4 469 51.4
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.4e-99 367.9 393 53.7
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 2.4e-99 367.1 352 56.2
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 5.4e-96 355.9 346 54.9
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.4e-90 336.7 364 54.1
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 6.9e-83 312.4 503 39.4
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 8.1e-76 288.9 365 46.8
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.5e-72 276.2 323 50.8
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.1e-69 268.5 381 44.9
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 2.5e-69 267.3 330 47.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.1e-59 235.3 237 51.1
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 4.2e-56 223.4 426 36.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.8e-54 218.0 284 45.8
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.9e-54 216.9 289 48.4
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 6.3e-44 183.0 519 30.6
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.6e-37 161.0 384 33.6
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 5.7e-37 159.8 116 63.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-32 145.2 158 55.1
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-32 145.2 116 61.2
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 7.2e-32 142.9 209 39.7
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.7e-31 141.0 195 43.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.8e-30 136.0 178 44.9
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-29 135.6 116 61.2
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 5.7e-29 133.3 172 47.1
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 7.5e-29 132.9 112 58.9
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-26 125.2 83 74.7
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 7.7e-26 122.9 82 73.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.9e-25 120.9 124 54.8
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.2e-24 117.5 150 48.7
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.2e-18 99.0 105 52.4
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 3.5e-18 97.4 127 45.7
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 8.0e-15 86.3 347 26.2
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 6.8e-14 83.2 177 34.5
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.5e-13 79.7 88 50.0
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.9e-09 67.4 51 56.9
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-07 62.0 44 63.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 4.0e-06 57.4 304 26.0


User provided reference genes

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