Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.8e-90 335.5 196 100.0
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.3e-55 220.3 139 100.0
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 5.8e-48 194.9 104 95.2
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 3.8e-47 192.2 105 92.4
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 4.9e-47 191.8 104 93.3
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 4.9e-47 191.8 105 92.4
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 4.9e-47 191.8 105 92.4
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.1e-46 190.7 105 90.5
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 2.4e-46 189.5 105 88.6
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.2e-46 189.1 105 89.5
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 4.2e-46 188.7 105 88.6
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 4.2e-46 188.7 105 88.6
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.6e-45 186.8 105 87.6
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.5e-45 185.7 105 87.6
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.5e-45 185.7 105 87.6
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 4.6e-45 185.3 105 87.6
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 6.0e-45 184.9 105 86.7
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 6.0e-45 184.9 105 86.7
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 6.0e-45 184.9 105 87.6
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 7.8e-45 184.5 105 86.7
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 7.8e-45 184.5 105 87.6
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 7.8e-45 184.5 105 86.7
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 7.8e-45 184.5 105 86.7
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.0e-44 184.1 105 86.7
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.0e-44 184.1 104 87.5
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.3e-44 183.7 105 86.7
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.3e-44 183.7 105 86.7
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.3e-44 183.7 105 86.7
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.3e-44 183.7 105 86.7
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.3e-44 183.7 105 86.7
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.7e-44 183.3 105 86.7
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.7e-44 183.3 105 84.8
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.7e-44 183.3 105 85.7
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.7e-44 183.3 105 85.7
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.7e-44 183.3 105 85.7
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.3e-44 183.0 105 85.7
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.0e-44 182.6 105 85.7
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.0e-44 182.6 105 85.7
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 3.0e-44 182.6 105 86.7
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 3.0e-44 182.6 105 85.7
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 3.0e-44 182.6 105 85.7
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 3.9e-44 182.2 105 84.8
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.1e-44 181.8 103 87.4
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 5.1e-44 181.8 105 85.7
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 5.1e-44 181.8 105 84.8
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 5.1e-44 181.8 105 85.7
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.1e-44 181.8 105 85.7
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.1e-44 181.8 105 85.7
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.6e-44 181.4 105 85.7
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.6e-44 181.4 105 85.7
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 6.6e-44 181.4 105 85.7
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 8.7e-44 181.0 105 86.7
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 8.7e-44 181.0 103 86.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 8.7e-44 181.0 105 84.8
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.1e-43 180.6 105 83.8
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 1.1e-43 180.6 105 83.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.1e-43 180.6 105 84.8
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-43 180.6 103 86.4
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.1e-43 180.6 107 86.0
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.5e-43 180.3 105 85.7
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.5e-43 180.3 105 84.8
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.9e-43 179.9 105 83.8
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.9e-43 179.9 105 84.8
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.5e-43 179.5 105 85.7
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.5e-43 179.5 105 83.8
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.3e-43 179.1 103 85.4
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.3e-43 178.7 105 82.9
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 4.3e-43 178.7 103 86.4
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 4.3e-43 178.7 103 85.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 5.6e-43 178.3 105 82.9
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 5.6e-43 178.3 102 85.3
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 5.6e-43 178.3 105 81.9
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 7.3e-43 177.9 105 83.8
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 9.6e-43 177.6 105 81.0
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 83.5
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 106 83.0
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 106 83.0
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.3e-42 177.2 101 87.1
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 1.6e-42 176.8 107 83.2
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 1.6e-42 176.8 107 83.2
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-42 176.4 105 81.9
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-42 176.4 105 81.9
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 2.1e-42 176.4 105 81.9
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 2.1e-42 176.4 105 81.9
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 2.1e-42 176.4 102 84.3
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 2.8e-42 176.0 105 81.9
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 82.5
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 82.5
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 2.8e-42 176.0 107 82.2
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 4.8e-42 175.3 105 81.9
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 4.8e-42 175.3 112 80.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.2e-42 174.9 105 81.9
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 8.1e-42 174.5 103 83.5
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.1e-41 174.1 105 81.0
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.4e-41 173.7 104 82.7
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.4e-41 172.9 105 80.0
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.0e-41 172.2 107 83.2
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 5.3e-41 171.8 105 80.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 9.0e-41 171.0 105 81.0
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-40 170.6 107 78.5
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-40 170.6 107 78.5
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.2e-40 170.6 107 78.5
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.2e-40 170.6 107 78.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.4e-40 169.1 101 83.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.4e-40 169.1 101 83.2
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 7.6e-40 167.9 106 78.3
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 7.6e-40 167.9 106 78.3
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.9e-39 166.0 131 69.5
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 3.8e-39 165.6 128 68.8
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 8.4e-39 164.5 107 79.4
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 8.4e-39 164.5 107 79.4
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.1e-38 164.1 106 76.4
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.1e-38 164.1 106 76.4
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.4e-38 162.9 96 83.3
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 2.4e-38 162.9 105 80.0
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.8e-36 156.8 165 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.9e-35 153.3 107 70.1
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 3.3e-35 152.5 103 73.8
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.1e-34 149.8 106 73.6
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-33 147.5 183 49.7
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 4.0e-33 145.6 102 71.6
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.5e-32 143.7 191 47.6
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 5.5e-30 135.2 76 88.2
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 7.1e-30 134.8 76 88.2
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 2.7e-29 132.9 77 85.7
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.3e-28 130.6 119 63.0
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.3e-28 130.6 225 40.4
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.8e-28 130.2 76 84.2
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.9e-27 126.7 71 84.5
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 2.8e-26 122.9 74 79.7
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 3.7e-26 122.5 76 77.6
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 2.6e-24 116.3 65 86.2
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 2.6e-24 116.3 65 86.2
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.4e-24 115.9 68 82.4
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 2.2e-23 113.2 76 71.1
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 3.5e-21 105.9 75 72.0
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.3e-20 104.0 134 53.7
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.8e-18 96.3 72 62.5
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 6.3e-18 95.1 60 78.3
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.4e-17 94.0 102 51.0
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 3.1e-17 92.8 82 61.0
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-16 90.9 67 70.1
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-15 87.4 76 60.5
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.3e-15 87.4 76 60.5
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.3e-15 87.4 76 60.5
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 1.7e-15 87.0 115 49.6
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.2e-15 86.7 106 50.9
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 8.8e-12 74.7 87 54.0
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 3.7e-10 69.3 34 88.2
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-09 67.8 44 79.5
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 2.4e-09 66.6 42 78.6
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.4e-09 66.6 42 78.6
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.4e-09 66.6 43 81.4
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.2e-08 64.3 39 82.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-08 64.3 42 81.0
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.0e-07 61.2 42 76.2
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 5.0e-07 58.9 39 76.9
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 5.0e-07 58.9 35 85.7
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 2.5e-06 56.6 34 82.4
Cpa.g.c34531 Carica papaya HOM05D004131 ORTHO05D004778 9.4e-06 54.7 29 86.2


User provided reference genes

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