Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.5e-59 231.1 120 100.0
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.9e-40 167.2 126 71.4
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.0e-26 123.6 116 58.6
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 9.7e-22 107.1 113 53.1
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.3e-21 106.7 113 53.1
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 6.3e-21 104.4 111 53.2
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 3.5e-19 98.6 111 52.3
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 4.7e-16 88.2 113 48.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.2e-13 79.3 102 43.1
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.4e-12 75.9 100 44.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 7.0e-12 74.3 108 38.0
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 9.1e-12 73.9 108 38.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.0e-11 72.8 108 38.0
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 2.7e-11 72.4 100 40.0
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.7e-11 72.4 114 41.2
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.7e-11 72.4 105 42.9
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 4.5e-11 71.6 105 41.0
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.5e-11 71.6 104 44.2
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.9e-11 71.2 104 42.3
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 7.7e-11 70.9 105 39.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.7e-11 70.9 105 41.9
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.0e-10 70.5 113 35.4
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-10 70.1 110 38.2
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.3e-10 70.1 99 40.4
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-10 69.7 119 36.1
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-10 69.7 113 33.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.7e-10 69.7 113 33.6
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.7e-10 69.7 113 34.5
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 2.3e-10 69.3 99 41.4
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 2.3e-10 69.3 109 40.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.3e-10 69.3 100 41.0
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.9e-10 68.9 113 33.6
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.9e-10 68.9 103 36.9
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 2.9e-10 68.9 117 35.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 3.8e-10 68.6 108 39.8
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.8e-10 68.6 110 35.5
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 3.8e-10 68.6 99 41.4
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 3.8e-10 68.6 97 38.1
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.0e-10 68.2 113 38.9
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 6.6e-10 67.8 106 39.6
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 6.6e-10 67.8 100 39.0
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 6.6e-10 67.8 100 39.0
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 6.6e-10 67.8 117 35.9
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 8.6e-10 67.4 103 35.9
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 8.6e-10 67.4 103 35.9
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 8.6e-10 67.4 103 35.9
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 8.6e-10 67.4 112 38.4
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 8.6e-10 67.4 100 38.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 8.6e-10 67.4 107 34.6
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 1.1e-09 67.0 113 34.5
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.1e-09 67.0 107 36.4
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.1e-09 67.0 107 36.4
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.1e-09 67.0 103 38.8
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.5e-09 66.6 109 35.8
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 1.5e-09 66.6 104 37.5
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 1.5e-09 66.6 104 37.5
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-09 66.2 104 36.5
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-09 66.2 104 36.5
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 1.9e-09 66.2 100 34.0
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.9e-09 66.2 109 33.0
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 2.5e-09 65.9 103 36.9
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.5e-09 65.9 109 33.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.5e-09 65.9 107 35.5
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 3.3e-09 65.5 103 34.0
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 3.3e-09 65.5 107 39.3
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 4.2e-09 65.1 103 36.9
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 4.2e-09 65.1 119 36.1
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 4.2e-09 65.1 113 34.5
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 4.2e-09 65.1 106 39.6
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.2e-09 65.1 117 41.9
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 4.2e-09 65.1 114 41.2
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 5.5e-09 64.7 118 35.6
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 5.5e-09 64.7 99 41.4
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 5.5e-09 64.7 99 38.4
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 7.2e-09 64.3 113 35.4
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.2e-09 64.3 104 36.5
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 9.5e-09 63.9 103 35.9
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 9.5e-09 63.9 107 39.3
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 9.5e-09 63.9 103 40.8
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 9.5e-09 63.9 105 38.1
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 9.5e-09 63.9 109 33.0
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 9.5e-09 63.9 106 36.8
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 9.5e-09 63.9 104 37.5
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.2e-08 63.5 103 35.9
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.2e-08 63.5 124 33.9
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-08 63.5 112 36.6
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.6e-08 63.2 112 36.6
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.6e-08 63.2 112 36.6
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.6e-08 63.2 114 36.8
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.1e-08 62.8 103 39.8
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.8e-08 62.4 96 34.4
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.8e-08 62.4 109 32.1
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-08 62.0 104 35.6
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-08 62.0 115 33.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-08 62.0 115 33.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.6e-08 62.0 115 33.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.6e-08 62.0 124 32.3
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 4.7e-08 61.6 115 33.0
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 4.7e-08 61.6 104 35.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 6.1e-08 61.2 104 35.6
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 6.1e-08 61.2 103 36.9
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 6.1e-08 61.2 103 36.9
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 6.1e-08 61.2 96 35.4
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 6.1e-08 61.2 110 32.7
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 6.1e-08 61.2 104 32.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 6.1e-08 61.2 100 39.0
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.0e-07 60.5 100 37.0
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.0e-07 60.5 132 36.4
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.0e-07 60.5 101 35.6
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 1.0e-07 60.5 107 40.2
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.0e-07 60.5 107 38.3
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 1.0e-07 60.5 107 38.3
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 1.4e-07 60.1 105 36.2
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-07 59.7 98 34.7
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.8e-07 59.7 100 39.0
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 2.3e-07 59.3 113 37.2
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 3.0e-07 58.9 104 34.6
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.0e-07 58.9 116 36.2
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 3.0e-07 58.9 38 73.7
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 4.0e-07 58.5 122 36.1
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.0e-07 58.5 101 36.6
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.2e-07 58.2 112 34.8
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 6.8e-07 57.8 131 32.1
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 6.8e-07 57.8 116 35.3
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 6.8e-07 57.8 108 36.1
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 8.9e-07 57.4 114 35.1
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-06 57.0 61 47.5
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.2e-06 57.0 104 39.4
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 1.2e-06 57.0 102 39.2
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.5e-06 56.6 120 30.8
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-06 56.2 98 35.7
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 2.0e-06 56.2 108 37.0
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.0e-06 56.2 36 72.2
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 2.6e-06 55.8 105 34.3
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 2.6e-06 55.8 32 75.0
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 2.6e-06 55.8 32 75.0
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 2.6e-06 55.8 100 33.0
arahy.Tifrunner.gnm1.ann1.SH745U Arachis hypogaea HOM05D012904 ORTHO05D004090 3.4e-06 55.5 106 33.0
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 3.4e-06 55.5 34 73.5
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 3.4e-06 55.5 116 35.3
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 3.4e-06 55.5 55 56.4
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.4e-06 55.5 50 58.0
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 3.4e-06 55.5 102 35.3
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 4.4e-06 55.1 109 34.9
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 5.7e-06 54.7 41 61.0
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 7.5e-06 54.3 111 35.1
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 7.5e-06 54.3 106 32.1
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 7.5e-06 54.3 40 60.0
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 9.8e-06 53.9 97 36.1


User provided reference genes

Program Settings