Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.1e-68 262.3 136 100.0
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.1e-66 256.5 136 97.8
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.4e-64 249.6 136 94.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 8.9e-64 246.9 136 92.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 3.4e-63 245.0 136 92.6
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.3e-62 243.0 136 91.9
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 4.7e-57 224.6 138 86.2
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.3e-54 216.5 136 78.7
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 6.4e-54 214.2 136 79.4
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 8.4e-54 213.8 136 80.1
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.4e-53 213.0 136 78.7
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.4e-53 213.0 136 78.7
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.9e-53 212.6 137 79.6
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 2.4e-53 212.2 136 78.7
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.2e-53 211.8 137 78.8
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 2.1e-52 209.1 133 78.2
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 2.1e-52 209.1 137 78.1
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 4.6e-52 208.0 137 78.8
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 6.0e-52 207.6 136 77.9
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 7.8e-52 207.2 139 78.4
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 1.0e-51 206.8 136 77.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.3e-51 206.5 136 75.0
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 3.9e-51 204.9 137 78.1
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 5.1e-51 204.5 139 76.3
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 5.1e-51 204.5 138 75.4
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.1e-51 204.5 136 75.7
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.5e-50 202.2 136 75.0
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.3e-50 201.8 137 75.2
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 4.3e-50 201.4 138 75.4
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 7.3e-50 200.7 138 74.6
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 9.6e-50 200.3 136 74.3
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 9.6e-50 200.3 134 72.4
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.6e-49 199.5 136 74.3
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.8e-49 198.7 138 76.1
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 2.8e-49 198.7 137 75.2
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.8e-49 198.7 137 75.2
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 4.8e-49 198.0 136 72.1
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 4.8e-49 198.0 138 73.9
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 4.8e-49 198.0 136 73.5
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 6.2e-49 197.6 136 73.5
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 8.1e-49 197.2 140 75.0
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.1e-49 197.2 137 75.2
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.1e-49 197.2 137 75.9
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.4e-48 196.4 138 74.6
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 1.4e-48 196.4 137 75.2
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 1.8e-48 196.1 136 71.3
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.4e-48 195.7 136 72.8
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 2.4e-48 195.7 136 73.5
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 3.1e-48 195.3 137 73.0
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.1e-48 195.3 138 74.6
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 4.0e-48 194.9 137 71.5
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 4.0e-48 194.9 138 72.5
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 4.0e-48 194.9 137 74.5
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.9e-48 194.1 137 73.7
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 9.0e-48 193.7 136 73.5
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 9.0e-48 193.7 138 72.5
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 1.2e-47 193.4 138 70.3
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 1.5e-47 193.0 139 69.8
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.0e-47 192.6 138 74.6
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 2.6e-47 192.2 138 71.7
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 2.6e-47 192.2 136 71.3
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.6e-47 192.2 136 71.3
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 4.5e-47 191.4 137 70.1
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 9.9e-47 190.3 139 71.2
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.3e-46 189.9 137 70.1
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.7e-46 189.5 136 71.3
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.7e-46 189.5 136 71.3
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.2e-46 189.1 138 71.0
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 4.9e-46 188.0 138 70.3
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.9e-45 186.0 137 70.1
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 2.4e-45 185.7 137 67.2
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 4.2e-45 184.9 139 70.5
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 5.4e-45 184.5 141 68.8
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 7.1e-45 184.1 139 69.8
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.2e-44 183.3 140 68.6
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.1e-44 182.6 137 68.6
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 2.1e-44 182.6 139 67.6
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.7e-44 182.2 140 68.6
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 7.9e-44 180.6 140 68.6
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.3e-43 179.9 138 67.4
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-43 179.9 138 67.4
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 1.8e-43 179.5 118 78.8
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.8e-43 179.5 139 67.6
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.3e-43 179.1 137 67.2
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.3e-43 179.1 137 67.2
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.3e-43 179.1 137 67.2
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.3e-43 179.1 137 67.2
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 3.9e-43 178.3 138 66.7
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 3.9e-43 178.3 138 66.7
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 5.1e-43 177.9 140 68.6
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 8.7e-43 177.2 140 68.6
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 8.7e-43 177.2 139 69.1
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.5e-42 176.4 136 68.4
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 2.5e-42 175.6 138 65.9
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 2.5e-42 175.6 138 65.9
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 2.5e-42 175.6 136 64.0
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 3.3e-42 175.3 137 65.0
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 4.3e-42 174.9 140 67.9
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 4.3e-42 174.9 106 78.3
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 7.4e-42 174.1 139 66.9
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 1.3e-41 173.3 125 72.8
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 2.1e-41 172.6 136 67.6
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 2.8e-41 172.2 168 57.7
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 4.8e-41 171.4 130 66.9
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.4e-40 169.9 107 76.6
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.5e-39 164.9 124 69.4
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.3e-38 163.3 145 60.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.3e-38 163.3 136 66.2
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 4.9e-38 161.4 121 68.6
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 6.4e-38 161.0 104 75.0
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 6.4e-38 161.0 116 69.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 8.4e-38 160.6 143 60.1
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 8.4e-38 160.6 209 49.3
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 5.5e-37 157.9 144 61.1
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 5.5e-37 157.9 137 62.0
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.6e-36 156.4 138 60.1
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.7e-36 155.6 126 66.7
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 3.5e-36 155.2 155 58.7
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 6.0e-36 154.5 120 67.5
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.0e-35 153.7 90 85.6
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 4.0e-32 141.7 88 81.8
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 7.6e-31 137.5 106 61.3
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.3e-30 136.7 102 69.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 3.8e-30 135.2 89 73.0
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 4.2e-29 131.7 108 67.6
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 9.3e-29 130.6 89 69.7
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 6.0e-28 127.9 121 59.5
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.3e-27 126.7 70 84.3
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.8e-27 126.3 144 51.4
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 6.7e-27 124.4 87 72.4
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 2.5e-26 122.5 90 66.7
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 2.5e-26 122.5 89 62.9
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 4.5e-23 111.7 89 57.3
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 7.6e-23 110.9 74 74.3
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 3.8e-22 108.6 108 57.4
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 7.2e-21 104.4 87 65.5
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.7e-17 93.2 65 70.8
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.9e-14 82.4 70 65.7
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 9.7e-10 67.4 87 51.7
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 1.4e-08 63.5 37 78.4
Aa31LG1G13960 Aethionema arabicum HOM05D002686 ORTHO05D003222 2.6e-07 59.3 135 30.4
Thhalv10014202m.g Eutrema salsugineum HOM05D002686 ORTHO05D003222 3.4e-07 58.9 144 29.2
Sp6g23760 Schrenkiella parvula HOM05D002686 ORTHO05D003222 4.5e-07 58.5 142 28.2
Ah.09g229170 Amaranthus hybridus HOM05D002686 ORTHO05D003222 5.9e-07 58.2 145 30.3
BcaB05g22817 Brassica carinata HOM05D002686 ORTHO05D003222 7.7e-07 57.8 144 28.5
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.0e-06 57.4 130 33.1
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.3e-06 57.0 98 33.7
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.3e-06 57.0 161 29.8
A02p06460 Brassica napus HOM05D002686 ORTHO05D003222 1.7e-06 56.6 134 29.1
BcaC04g19463 Brassica carinata HOM05D002686 ORTHO05D003222 2.9e-06 55.8 141 28.4
BNapus_Darmor_BZH_scaffold_38p01360 Brassica napus HOM05D002686 ORTHO05D003222 2.9e-06 55.8 134 29.1
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 2.9e-06 55.8 149 34.9
BcaC03g13794 Brassica carinata HOM05D002686 ORTHO05D003222 3.8e-06 55.5 134 29.1
BolC2t07068H Brassica oleracea HOM05D002686 ORTHO05D003222 3.8e-06 55.5 134 29.1
COL.COLO4_21229 Corchorus olitorius HOM05D002686 ORTHO05D003222 3.8e-06 55.5 134 29.1
Lj4g0026142 Lotus japonicus HOM05D002686 ORTHO05D003222 3.8e-06 55.5 141 29.8
Gohir.A09G207600 Gossypium hirsutum HOM05D002686 ORTHO05D003222 5.0e-06 55.1 134 29.9
SalBow6G2263 Salvia bowleyana HOM05D002686 ORTHO05D003222 5.0e-06 55.1 156 30.8
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 95 32.6
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 142 28.9
Gohir.D06G078000 Gossypium hirsutum HOM05D002686 ORTHO05D003222 8.5e-06 54.3 134 29.9
Gorai.010G091000 Gossypium raimondii HOM05D002686 ORTHO05D003222 8.5e-06 54.3 134 29.9
Lalb_Chr13g0299321 Lupinus albus HOM05D002686 ORTHO05D003222 8.5e-06 54.3 141 29.1
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 8.5e-06 54.3 107 31.8


User provided reference genes

Program Settings