Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.7e-302 1041.2 520 100.0
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.2e-286 989.2 524 94.8
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 5.9e-241 837.4 522 81.6
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 2.3e-232 808.9 501 80.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.8e-229 797.3 523 76.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 7.5e-228 793.9 513 76.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.8e-227 792.0 488 81.6
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.7e-227 791.6 488 81.4
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 5.0e-224 781.2 525 73.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 8.6e-224 780.4 482 78.6
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.0e-218 760.8 498 76.3
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 3.1e-213 745.3 519 70.5
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.2e-205 718.0 522 69.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 6.8e-205 717.6 505 68.7
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 4.9e-203 711.4 529 65.2
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.1e-202 708.4 520 66.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.6e-201 704.9 511 68.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 6.0e-201 704.5 516 67.2
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.5e-199 699.9 444 78.8
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.5e-199 699.1 500 67.4
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.3e-199 698.7 506 68.4
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.2e-198 696.8 497 67.6
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.6e-198 696.4 515 67.6
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 6.2e-198 694.5 506 67.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 6.8e-197 691.0 508 67.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 4.4e-196 688.3 496 68.3
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 9.9e-196 687.2 506 66.0
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.7e-195 686.4 516 65.7
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.2e-195 686.0 497 66.6
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.9e-195 684.9 518 63.5
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 6.4e-195 684.5 476 70.0
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 8.4e-195 684.1 513 65.1
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-194 683.7 498 66.5
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.4e-194 683.3 518 62.9
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.4e-194 683.3 515 65.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.4e-194 683.3 487 68.0
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 3.2e-194 682.2 492 67.5
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.2e-194 681.8 518 62.9
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 7.1e-194 681.0 507 65.7
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.6e-193 679.9 501 66.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.1e-193 679.5 512 64.3
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-193 679.1 507 65.1
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-193 679.1 507 65.1
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.6e-193 678.3 518 62.5
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 4.6e-193 678.3 518 65.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-192 676.4 507 65.3
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.7e-192 676.4 519 64.0
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 2.3e-192 676.0 514 64.8
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.1e-192 674.9 507 64.7
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 6.6e-192 674.5 479 67.2
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 8.7e-192 674.1 517 64.2
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.1e-191 673.7 510 64.7
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 7.3e-191 671.0 495 66.3
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 9.6e-191 670.6 516 64.5
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.8e-190 669.1 508 64.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 4.8e-190 668.3 500 65.4
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 8.1e-190 667.5 514 62.8
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.4e-189 666.8 501 65.1
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.4e-189 666.8 500 65.8
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.4e-189 666.0 502 64.5
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 3.1e-189 665.6 483 67.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 4.0e-189 665.2 502 65.9
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.3e-189 664.8 612 57.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 3.4e-188 662.1 492 66.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 3.4e-188 662.1 489 66.3
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 5.8e-188 661.4 497 63.8
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.7e-187 659.8 498 65.7
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.7e-187 659.8 486 65.0
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.9e-187 659.1 491 65.6
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.9e-187 659.1 502 65.1
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 3.8e-187 658.7 502 63.3
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-186 657.1 488 64.5
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.9e-186 656.4 446 72.6
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.4e-186 656.0 513 62.6
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.1e-186 654.4 510 63.5
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.6e-185 653.3 495 63.4
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 2.7e-185 652.5 502 62.4
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.6e-185 651.7 502 62.7
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 6.0e-185 651.4 511 61.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 7.9e-185 651.0 517 61.9
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.0e-184 650.6 519 62.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-184 650.2 509 61.7
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-184 650.2 456 69.5
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.0e-184 649.0 505 63.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 5.1e-184 648.3 517 60.9
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 6.6e-184 647.9 514 62.6
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.1e-183 647.1 547 59.4
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.3e-183 645.6 517 60.7
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 7.3e-183 644.4 514 61.1
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-182 643.7 511 60.9
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.3e-182 643.7 555 59.8
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.8e-182 642.5 495 62.2
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 6.2e-182 641.3 509 60.9
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.0e-180 636.3 515 59.8
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 9.9e-180 634.0 490 63.7
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.9e-180 634.0 534 61.4
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.9e-179 631.7 515 60.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 6.4e-179 631.3 517 60.5
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 6.4e-179 631.3 517 60.5
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 6.4e-179 631.3 517 60.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 6.4e-179 631.3 486 63.0
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 8.4e-179 630.9 491 61.9
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.1e-178 630.6 491 61.3
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.2e-178 628.6 431 70.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.1e-178 627.9 488 62.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 7.1e-178 627.9 488 62.3
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.6e-177 626.7 517 60.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 2.7e-177 625.9 517 60.0
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.5e-177 625.5 503 61.8
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.8e-176 623.2 497 61.0
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.8e-176 623.2 549 58.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 4.0e-173 612.1 596 54.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.3e-173 611.7 659 51.4
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 6.9e-173 611.3 511 60.3
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.2e-172 610.5 523 60.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 7.6e-172 607.8 508 60.8
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-171 605.9 393 73.8
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.5e-171 604.7 477 62.5
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.2e-170 602.1 520 58.1
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.2e-169 600.5 476 60.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 2.1e-169 599.7 530 56.6
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 6.0e-169 598.2 492 60.2
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.3e-167 592.4 513 57.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 7.4e-167 591.3 509 58.5
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.8e-165 586.6 536 56.5
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.1e-165 585.5 438 63.5
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.0e-163 580.9 496 59.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.2e-162 575.9 519 58.2
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.5e-159 567.0 460 60.9
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 3.3e-159 565.8 477 58.5
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.9e-156 555.1 505 58.0
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 6.5e-155 551.6 458 61.4
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.0e-151 540.0 355 76.6
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 3.7e-150 535.8 437 60.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.3e-149 531.9 519 53.2
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-139 500.7 483 53.8
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.6e-135 486.5 386 63.0
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.5e-130 470.7 524 46.6
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.6e-127 459.9 514 46.1
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 4.4e-127 459.1 509 47.0
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.7e-126 456.1 494 49.6
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.3e-118 431.0 421 50.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.7e-108 396.7 265 73.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 5.0e-107 392.5 544 41.4
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.7e-102 377.5 349 55.3
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 6.8e-88 328.9 342 51.5
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.6e-74 282.0 236 60.2
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-62 244.6 232 55.6
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 7.4e-58 229.2 213 54.0
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 6.3e-49 199.5 151 64.2
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 5.9e-39 166.4 316 32.9
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.7e-38 164.9 106 67.9
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 8.5e-38 162.5 101 75.2
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.9e-35 153.7 460 28.7
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 6.3e-33 146.4 113 60.2
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.9e-30 137.5 171 47.4
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 7.2e-29 132.9 112 61.6
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-28 132.1 112 61.6
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.0e-27 127.5 86 67.4
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 1.1e-24 119.0 99 57.6
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 4.5e-23 113.6 84 61.9
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.5e-21 106.7 75 65.3
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.4e-19 102.1 83 57.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.8e-19 99.4 112 54.5
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 8.8e-19 99.4 88 61.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.7e-17 95.1 62 67.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.8e-11 73.2 48 68.8
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 4.4e-10 70.5 81 49.4
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 5.7e-10 70.1 49 63.3
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.2e-09 68.2 61 54.1
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.1e-08 64.3 40 70.0
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.0e-07 61.6 39 71.8
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 4.5e-07 60.5 57 42.1
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 6.5e-06 56.6 59 39.0
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 8.5e-06 56.2 59 50.8


User provided reference genes

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