Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005041g0010 Nicotiana tabacum HOM05D006358 ORTHO05D008185 2.7e-236 821.6 417 100.0
Nitab4.5_0003436g0040 Nicotiana tabacum HOM05D006358 ORTHO05D008185 9.6e-218 760.0 417 93.0
Peaxi162Scf00192g00019 Petunia axillaris HOM05D006358 ORTHO05D008185 1.5e-207 726.1 417 87.8
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 6.9e-200 700.7 419 86.6
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 5.0e-198 694.5 414 87.2
Sopen01g002330 Solanum pennellii HOM05D006358 ORTHO05D008185 1.4e-195 686.4 415 86.3
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 1.8e-195 686.0 414 86.0
Actinidia01838 Actinidia chinensis HOM05D006358 ORTHO05D008185 3.3e-157 558.9 430 67.0
Cc01_g03170 Coffea canephora HOM05D006358 ORTHO05D008185 1.2e-156 557.0 368 75.3
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 1.8e-155 553.1 417 68.1
Oeu058541.2 Olea europaea HOM05D006358 ORTHO05D008185 7.5e-154 547.7 475 63.2
TAR633G2634 Trochodendron aralioides HOM05D006358 ORTHO05D008185 9.8e-154 547.4 418 67.2
QL01p009947 Quercus lobata HOM05D006358 ORTHO05D008185 2.2e-153 546.2 417 67.9
Manes.03G089800 Manihot esculenta HOM05D006358 ORTHO05D008185 8.3e-153 544.3 373 72.4
Prupe.6G013900 Prunus persica HOM05D006358 ORTHO05D008185 8.3e-153 544.3 409 67.7
Potri.001G011700 Populus trichocarpa HOM05D006358 ORTHO05D008185 1.4e-152 543.5 405 68.4
Sabra01G0008700 Salix brachista HOM05D006358 ORTHO05D008185 1.4e-152 543.5 397 69.5
Ciclev10015496m.g Citrus clementina HOM05D006358 ORTHO05D008185 3.2e-152 542.3 389 71.0
HanXRQChr11g0345451 Helianthus annuus HOM05D006358 ORTHO05D008185 3.2e-152 542.3 373 71.8
vmacro21759 Vaccinium macrocarpon HOM05D006358 ORTHO05D008185 9.2e-152 540.8 468 62.2
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 1.2e-151 540.4 420 64.5
Migut.D00538 Erythranthe guttata HOM05D006358 ORTHO05D008185 1.2e-151 540.4 415 67.7
Hma1.2p1_0050F.1_g029070 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 1.2e-151 540.4 388 71.6
Gohir.A08G078500 Gossypium hirsutum HOM05D006358 ORTHO05D008185 2.3e-150 536.2 372 73.1
Thecc.09G216800 Theobroma cacao HOM05D006358 ORTHO05D008185 5.0e-150 535.0 371 72.5
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 1.9e-149 533.1 367 72.2
Gorai.004G092800 Gossypium raimondii HOM05D006358 ORTHO05D008185 1.9e-149 533.1 372 72.6
TWI34G0094 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 3.3e-149 532.3 377 71.9
Eucgr.B02608 Eucalyptus grandis HOM05D006358 ORTHO05D008185 5.6e-149 531.6 395 69.9
COL.COLO4_10429 Corchorus olitorius HOM05D006358 ORTHO05D008185 1.0e-147 527.3 383 69.7
Duzib150G0556 Durio zibethinus HOM05D006358 ORTHO05D008185 1.2e-146 523.9 378 70.1
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 1.5e-146 523.5 367 73.0
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 3.4e-146 522.3 366 73.2
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 3.4e-146 522.3 366 73.2
PGR119G1893 Punica granatum HOM05D006358 ORTHO05D008185 7.5e-146 521.2 382 68.3
EL10Ac4g10334 Beta vulgaris HOM05D006358 ORTHO05D008185 1.7e-145 520.0 420 64.3
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 2.2e-145 519.6 365 71.0
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 3.2e-144 515.8 425 64.5
CANSAT54G1685 Cannabis sativa HOM05D006358 ORTHO05D008185 1.2e-143 513.8 389 68.4
Sc09g0000330 Simmondsia chinensis HOM05D006358 ORTHO05D008185 2.7e-143 512.7 368 68.2
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 4.6e-143 511.9 405 64.9
Lj2A674T44 Lonicera japonica HOM05D006358 ORTHO05D008185 7.8e-143 511.1 390 66.7
CsaV3_4G023700 Cucumis sativus L. HOM05D006358 ORTHO05D008185 1.3e-142 510.4 371 69.5
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 1.7e-142 510.0 413 65.6
PSO339G4609 Papaver somniferum HOM05D006358 ORTHO05D008185 5.0e-142 508.4 359 69.6
ClCG02G023710 Citrullus lanatus HOM05D006358 ORTHO05D008185 1.9e-141 506.5 371 69.8
Aqoxy1G00024 Aquilegia oxysepala HOM05D006358 ORTHO05D008185 5.6e-141 505.0 388 66.2
PSO384G4606 Papaver somniferum HOM05D006358 ORTHO05D008185 2.1e-140 503.1 372 66.7
VMungo0720G2736 Vigna mungo HOM05D006358 ORTHO05D008185 1.8e-139 500.0 382 65.2
Lalb_Chr02g0144221 Lupinus albus HOM05D006358 ORTHO05D008185 1.3e-137 493.8 354 67.8
THA.LOC104810430 Tarenaya hassleriana HOM05D006358 ORTHO05D008185 1.7e-137 493.4 365 67.1
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 2.9e-137 492.7 354 67.2
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 2.9e-137 492.7 378 65.1
unitig_0.g179 Utricularia gibba HOM05D006358 ORTHO05D008185 2.4e-136 489.6 400 63.8
FAN11G2908 Fragaria x ananassa HOM05D000259 ORTHO05D008185 1.2e-135 487.3 342 73.1
FAN25G3418 Fragaria x ananassa HOM05D000259 ORTHO05D008185 1.0e-134 484.2 342 72.5
Cpa.g.sc1127.2 Carica papaya HOM05D006358 ORTHO05D008185 1.3e-134 483.8 338 73.1
Lj5g0002595 Lotus japonicus HOM05D006358 ORTHO05D008185 1.3e-134 483.8 368 65.2
Hund07562 Selenicereus undatus HOM05D006358 ORTHO05D008185 2.3e-134 483.0 391 66.5
Medtr1g116320 Medicago truncatula HOM05D006358 ORTHO05D008185 8.6e-134 481.1 388 63.4
Carub.0001s4002 Capsella rubella HOM05D006358 ORTHO05D008185 2.1e-132 476.5 365 64.7
SGA_v2.0_scaffold1G00759 Striga asiatica HOM05D006358 ORTHO05D008185 2.8e-132 476.1 337 69.4
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 3.6e-132 475.7 376 65.2
AL1G58910 Arabidopsis lyrata HOM05D006358 ORTHO05D008185 6.2e-132 474.9 366 65.0
TPR.G10386 Trifolium pratense HOM05D006358 ORTHO05D008185 8.1e-132 474.6 369 65.9
AT1G51110 Arabidopsis thaliana HOM05D006358 ORTHO05D008185 4.0e-131 472.2 390 62.1
MELO3C014648.2 Cucumis melo HOM05D006358 ORTHO05D008185 4.0e-131 472.2 344 69.5
Sp1g37840 Schrenkiella parvula HOM05D006358 ORTHO05D008185 6.8e-131 471.5 360 64.4
BcaB07g33557 Brassica carinata HOM05D006358 ORTHO05D008185 1.2e-130 470.7 360 64.2
CARHR041130 Cardamine hirsuta HOM05D006358 ORTHO05D008185 1.2e-130 470.7 367 64.6
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 1.5e-130 470.3 343 71.1
A06p02670 Brassica napus HOM05D006358 ORTHO05D008185 4.4e-130 468.8 360 64.2
BraA06t23476Z Brassica rapa HOM05D006358 ORTHO05D008185 9.9e-130 467.6 360 63.9
BcaC08g43281 Brassica carinata HOM05D006358 ORTHO05D008185 2.2e-129 466.5 360 64.2
C06p06310 Brassica napus HOM05D006358 ORTHO05D008185 2.2e-129 466.5 360 64.2
BolC6t35740H Brassica oleracea HOM05D006358 ORTHO05D008185 2.2e-129 466.5 360 64.2
Dinv36328 Davidia involucrata HOM05D006358 ORTHO05D008185 3.8e-129 465.7 365 68.5
Thhalv10011532m.g Eutrema salsugineum HOM05D006358 ORTHO05D008185 1.4e-128 463.8 367 63.5
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 1.6e-127 460.3 385 61.0
Lsat_1_v5_gn_1_68460 Lactuca sativa HOM05D006358 ORTHO05D008185 7.8e-127 458.0 445 56.6
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 3.8e-121 439.1 360 60.3
AUR62019212 Chenopodium quinoa HOM05D006358 ORTHO05D008185 2.4e-120 436.4 398 60.1
Gohir.D08G088366 Gossypium hirsutum HOM05D006358 ORTHO05D008185 8.1e-116 421.4 285 74.7
CDE04G2070 Ceratophyllum demersum HOM05D006358 ORTHO05D008185 8.4e-113 411.4 382 55.8
Sed0014420 Sechium edule HOM05D006358 ORTHO05D008185 8.4e-113 411.4 300 71.3
AUR62000042 Chenopodium quinoa HOM05D006358 ORTHO05D008185 1.4e-112 410.6 396 56.6
Atru.chr3.2139 Acer truncatum HOM05D006358 ORTHO05D008185 7.1e-112 408.3 304 70.7
Glyma.20G244500 Glycine max HOM05D006358 ORTHO05D008185 1.3e-110 404.1 366 56.3
Os07g0470700 Oryza sativa ssp. japonica HOM05D006358 ORTHO05D008185 1.1e-109 401.0 360 57.8
MBI06_g07792_MAGBIO Magnolia biondii HOM05D006358 ORTHO05D008185 5.8e-106 388.7 384 57.0
Ca_11387_v3 Cicer arietinum L. HOM05D006358 ORTHO05D008185 1.9e-104 383.6 285 64.9
Pp3c6_24510 Physcomitrium patens HOM05D006358 ORTHO05D008185 1.3e-102 377.5 356 54.5
Zm00001eb320130 Zea mays HOM05D006358 ORTHO05D008185 3.9e-102 375.9 403 50.1
Mapoly0065s0038 Marchantia polymorpha HOM05D006358 ORTHO05D008185 2.8e-100 369.8 353 54.1
Phvul.007G005400 Phaseolus vulgaris HOM05D006358 ORTHO05D008185 1.6e-95 354.0 409 48.4
Glyma.10G294800 Glycine max HOM05D006358 ORTHO05D008185 2.3e-94 350.1 375 50.4
FAN17G2784 Fragaria x ananassa HOM05D006358 ORTHO05D008185 6.9e-91 338.6 227 78.4
QL01p009975 Quercus lobata HOM05D006358 ORTHO05D008185 3.4e-90 336.3 306 61.1
AagrBONN_evm.TU.Sc2ySwM_340.166 Anthoceros agrestis HOM05D006358 ORTHO05D008185 5.0e-81 305.8 363 47.4
Nn2g15694 Nelumbo nucifera HOM05D006358 ORTHO05D008185 9.1e-75 285.0 407 42.3
Atru.BG.108.p Acer truncatum HOM05D006358 ORTHO05D008185 2.2e-68 263.8 172 79.1
SMO145G0194 Selaginella moellendorffii HOM05D006358 ORTHO05D008185 5.0e-65 252.7 173 72.3
Hma1.2p1_0535F.1_g173790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 5.9e-58 229.2 181 66.9
BcaB07g33599 Brassica carinata HOM05D006358 ORTHO05D008185 2.1e-55 220.7 165 69.1
Cre03.g176350 Chlamydomonas reinhardtii HOM05D006358 ORTHO05D008185 2.0e-53 214.2 420 35.0
SEGI_30485 Sequoiadendron giganteum HOM05D006358 ORTHO05D008185 1.4e-46 191.4 182 53.8
TWI34G1842 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 1.8e-46 191.0 134 73.9
SEGI_10329 Sequoiadendron giganteum HOM05D006358 ORTHO05D008185 2.0e-37 161.0 130 65.4
BolC6t35742H Brassica oleracea HOM05D006358 ORTHO05D008185 3.4e-37 160.2 144 52.8
Cpa.g.sc1127.1 Carica papaya HOM05D006358 ORTHO05D008185 3.4e-37 160.2 193 50.3
BcaC08g43283 Brassica carinata HOM05D006358 ORTHO05D008185 1.3e-36 158.3 142 52.8
Hma1.2p1_0238F.1_g099790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 2.2e-36 157.5 110 65.5
C06p06330 Brassica napus HOM05D000466 ORTHO05D000331 1.6e-34 151.4 173 45.7
Ah.06g193120 Amaranthus hybridus HOM05D000044 ORTHO05D000051 2.3e-33 147.5 104 60.6
TWI60G1657 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 1.6e-31 141.4 210 46.2
MD03G1014600 Malus domestica HOM05D006358 ORTHO05D008185 2.4e-27 127.5 124 47.6
MCO12G476 Micromonas commoda HOM05D006358 ORTHO05D008185 1.1e-24 118.6 239 36.0
HPP92_008465 Vanilla planifolia HOM05D006358 ORTHO05D008185 2.0e-21 107.8 128 47.7
CSS0022118 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 1.3e-20 105.1 65 72.3
SMO222G0017 Selaginella moellendorffii HOM05D006358 ORTHO05D008185 3.0e-17 94.0 171 41.5
CSS0000942 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 3.1e-14 84.0 50 74.0
HPP92_008464 Vanilla planifolia HOM05D006358 ORTHO05D008185 5.2e-14 83.2 110 44.5
CSS0018817 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 1.3e-12 78.6 44 86.4
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 4.9e-12 76.6 90 50.0
Ah.06g193130 Amaranthus hybridus HOM05D006358 ORTHO05D008185 1.4e-11 75.1 111 45.0
Glyma.03G107232 Glycine max HOM05D006358 ORTHO05D000607 2.7e-10 70.9 104 37.5
MCO09G399 Micromonas commoda HOM05D006358 ORTHO05D008185 3.0e-09 67.4 232 30.2
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.5e-08 65.1 183 28.4
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 1.5e-08 65.1 197 27.9
TWI60G1314 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 1.5e-08 65.1 74 51.4
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 2.5e-08 64.3 186 29.0
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 4.3e-08 63.5 183 27.3
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 9.6e-08 62.4 189 29.1
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 1.2e-07 62.0 219 27.9
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 2.1e-07 61.2 222 26.1
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 2.1e-07 61.2 182 28.0
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 2.1e-07 61.2 183 28.4
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 2.8e-07 60.8 191 29.8
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 2.8e-07 60.8 196 28.6
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 2.8e-07 60.8 197 30.5
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 3.6e-07 60.5 174 27.0
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 4.7e-07 60.1 231 26.8
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 4.7e-07 60.1 192 29.7
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 6.2e-07 59.7 168 28.6
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 6.2e-07 59.7 168 28.6
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 6.2e-07 59.7 168 28.6
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 1.1e-06 58.9 169 27.2
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 1.1e-06 58.9 161 28.0
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 1.1e-06 58.9 189 29.6
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 1.4e-06 58.5 169 27.2
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 1.4e-06 58.5 171 29.2
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.8e-06 58.2 167 27.5
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 1.8e-06 58.2 222 25.2
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 1.8e-06 58.2 197 26.4
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 2.4e-06 57.8 163 28.2
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 2.4e-06 57.8 169 27.8
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 3.1e-06 57.4 199 28.1
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 4.0e-06 57.0 175 26.3
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 4.0e-06 57.0 184 27.7
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 4.0e-06 57.0 161 28.0
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 5.2e-06 56.6 171 28.1
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 5.2e-06 56.6 185 26.5
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 5.2e-06 56.6 169 30.2
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 5.2e-06 56.6 169 30.2
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.9e-06 56.2 190 27.9
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 6.9e-06 56.2 182 29.7
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 9.0e-06 55.8 196 26.5
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 9.0e-06 55.8 171 28.1
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 9.0e-06 55.8 169 26.6


User provided reference genes

Program Settings