Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.6e-147 525.4 267 100.0
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.8e-132 476.1 252 94.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 8.5e-127 457.2 254 89.4
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.2e-125 453.4 254 87.8
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 3.6e-125 451.8 254 87.4
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.4e-124 449.9 254 88.2
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 8.8e-124 447.2 254 87.8
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.4e-123 444.9 254 87.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.8e-122 442.2 254 87.0
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.8e-121 439.5 254 86.6
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.2e-104 383.6 206 94.7
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 8.1e-101 370.9 241 75.5
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 4.0e-100 368.6 238 75.6
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 5.2e-100 368.2 240 76.2
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 6.8e-100 367.9 233 77.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.2e-99 367.1 234 76.9
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.6e-99 365.9 226 80.5
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.8e-99 364.8 240 73.8
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.5e-99 364.4 252 73.0
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 6.4e-98 361.3 239 73.2
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.3e-98 360.9 260 71.2
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 4.1e-97 358.6 248 72.2
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.4e-97 358.2 238 74.8
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.2e-96 357.1 229 75.5
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.7e-96 355.9 236 73.3
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.7e-96 355.9 241 74.3
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 4.6e-96 355.1 241 73.9
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.0e-96 354.8 259 70.3
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 6.0e-96 354.8 238 74.4
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 7.8e-96 354.4 252 71.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.0e-95 354.0 239 71.1
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.7e-95 353.2 232 74.6
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.3e-95 352.8 232 74.6
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.3e-95 352.8 239 73.2
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 3.0e-95 352.4 242 74.0
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 3.0e-95 352.4 239 75.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.0e-95 352.4 239 75.3
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 3.9e-95 352.1 240 72.1
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 8.6e-95 350.9 238 73.1
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 8.6e-95 350.9 237 73.4
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 1.1e-94 350.5 239 72.8
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.5e-94 350.1 246 69.9
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.5e-94 350.1 228 75.4
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 1.9e-94 349.7 234 73.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.3e-94 349.0 203 82.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 5.6e-94 348.2 234 73.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 7.3e-94 347.8 233 72.5
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 7.3e-94 347.8 238 73.1
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 9.5e-94 347.4 206 81.6
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.1e-93 346.3 244 71.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 3.6e-93 345.5 229 74.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.7e-93 345.1 204 79.4
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 4.7e-93 345.1 231 74.5
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.2e-93 344.7 239 71.5
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 6.2e-93 344.7 240 71.2
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 6.2e-93 344.7 218 78.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 8.1e-93 344.4 204 81.9
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-92 344.0 210 80.5
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.4e-92 343.6 238 70.6
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.4e-92 343.6 225 74.2
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.8e-92 343.2 232 72.4
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 3.1e-92 342.4 221 75.1
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 3.1e-92 342.4 232 72.8
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 4.0e-92 342.0 234 72.6
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 4.0e-92 342.0 246 68.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 6.8e-92 341.3 208 77.9
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 6.8e-92 341.3 246 68.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.2e-91 340.5 227 74.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.2e-91 340.5 249 67.1
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.5e-91 340.1 226 73.5
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.0e-91 339.7 212 76.9
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 3.4e-91 339.0 231 72.7
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.6e-91 337.8 215 78.1
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 9.9e-91 337.4 241 68.9
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 9.9e-91 337.4 246 68.7
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.3e-90 337.0 252 68.7
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.7e-90 336.7 253 68.8
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.7e-90 335.5 204 77.9
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 4.9e-90 335.1 234 70.9
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 6.4e-90 334.7 204 79.4
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 8.4e-90 334.3 247 68.4
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.9e-89 333.2 239 68.6
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.2e-88 330.5 249 66.7
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.6e-88 330.1 236 70.8
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.7e-88 329.3 260 62.3
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 3.5e-88 328.9 223 72.6
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.6e-88 328.6 221 72.4
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.0e-87 327.4 233 68.7
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.3e-87 327.0 263 63.5
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.3e-87 327.0 253 65.2
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.0e-87 325.9 247 66.0
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.9e-87 325.5 247 66.0
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 3.9e-87 325.5 233 68.7
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 8.6e-87 324.3 240 67.5
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.1e-86 323.9 215 73.5
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.9e-86 323.2 234 67.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 3.3e-86 322.4 241 67.6
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 7.3e-86 321.2 234 69.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 9.6e-86 320.9 241 67.2
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.7e-85 318.5 241 66.4
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.8e-84 316.6 262 66.0
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.0e-84 315.5 262 65.6
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.4e-81 307.0 193 77.2
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.4e-81 307.0 216 69.9
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.4e-81 305.1 211 71.6
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.7e-79 300.1 226 65.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.5e-78 297.0 180 85.0
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 9.6e-78 294.3 206 68.4
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 3.6e-77 292.4 202 70.3
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 6.2e-77 291.6 221 62.4
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.1e-76 289.3 248 61.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.7e-74 283.5 207 65.2
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.4e-73 279.6 211 64.9
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.3e-71 273.9 246 56.1
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.3e-70 268.9 206 63.1
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 7.1e-65 251.5 179 72.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 7.1e-65 251.5 168 75.0
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 3.9e-63 245.7 232 53.9
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.8e-60 236.9 229 54.6
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.4e-57 227.3 205 53.2
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 5.5e-57 225.3 233 51.5
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 2.1e-53 213.4 119 81.5
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.4e-52 209.9 209 52.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 4.5e-51 205.7 243 44.0
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.9e-51 205.3 174 62.6
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 4.6e-48 195.7 167 62.3
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 3.9e-47 192.6 244 38.1
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 6.3e-45 185.3 109 80.7
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 2.0e-38 163.7 212 40.1
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 9.4e-33 144.8 106 69.8
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.8e-31 140.6 130 59.2
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.6e-30 136.7 103 68.9
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.6e-27 126.7 104 61.5
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 5.9e-27 125.6 88 71.6
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.5e-22 110.9 154 38.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 5.5e-17 92.4 57 82.5
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.1e-12 78.2 247 32.0
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 3.1e-12 76.6 69 58.0
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.9e-11 72.4 44 77.3
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 1.5e-09 67.8 60 60.0
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 4.4e-06 56.2 33 66.7


User provided reference genes

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